4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/agpSangerUnfinished/agpSangerUnfinished.c src/hg/agpSangerUnfinished/agpSangerUnfinished.c index 8de8828..88421cb 100644 --- src/hg/agpSangerUnfinished/agpSangerUnfinished.c +++ src/hg/agpSangerUnfinished/agpSangerUnfinished.c @@ -1,17 +1,17 @@ /* Copyright (C) 2011 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ /* agpSangerUnfinished - Fixes chrom.agp or scaffold.agp * Galt Barber 2009-06-22 * Produces an agp file that matches the unfinished contig names * that are found in contigs.fa. * Apparently Sanger wants to use these unfinished ones * but they are not allowed to submit them to Genbank. * So the agp matches the genbank record, but the fasta * file does not. * The needed information is actually in the files, * but it is stored in a completely non-standard way. * So, we change the frag names in the agp to match * the fasta, and we use the frag start and end * also in the matching. The final agp frag start and end * for these must be modified to be 1, size-of-frag