f3ea91ffb3854301e53d2cd7e125c56d168adc3c max Mon Nov 22 11:12:37 2021 -0800 more fixes on the license files after talking to Jim on the phone, refs #27614 diff --git src/hg/htdocs/license/index.html src/hg/htdocs/license/index.html index 22574d1..beff342 100755 --- src/hg/htdocs/license/index.html +++ src/hg/htdocs/license/index.html @@ -42,96 +42,97 @@ The majority of the Genome Browser source code is available under the MIT license, see <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/LICENSE" target=_blank>the LICENSE file in our source code repository</a>. As such, the <a href="https://hgdownload.soe.ucsc.edu/downloads.html#utilities_downloads"> Unix command line utilities</a> needed to build tracks, track hub files, computational pipelines, and our hundreds of tools to filter, sort, rearrange, join, and process genome annotation files can be used and redistributed freely via package managers and installation tools, even for commercial use (except BLAT/LiftOver). Notable examples are bedToBigBed, wigToBigWig, overlapSelect, featureBits, pslMap, pslFilter and pslCDnaFilter. </p> <p> The exceptions are source code directories with special LICENSE files in them. -These are <code>kent/src/blat</code>, <code>kent/src/jkOwnLib</code>, and +These are <code>kent/src/blat</code>, <code>kent/src/isPcr</code>, <code>kent/src/jkOwnLib</code>, and the programs that produce the graphical images or user interface for the UCSC Genome Browser. This includes the following subdirectories under <code>kent/src/hg</code>: </p> -<p> -<code>cgilib das encode hgApi hgCollection hgFileSearch hgFileUi hgGateway hgGene +<p><code>cgilib hgApi hgCollection hgFileSearch hgFileUi hgGateway hgGene hgGenome hgIntegrator hgPal hgPcr hgPhyloPlace hgPublicSessions hgSession hgSuggest hgTables hgTrackUi hgTracks hgVai hgc hubApi near visiGene liftOver</code> </p> <p> See the LICENSE file in the top level of our source code for a listing of licenses and directories that they apply to: <a href="https://github.com/ucscGenomeBrowser/kent/blob/master/LICENSE"> https://github.com/ucscGenomeBrowser/kent/blob/master/LICENSE</a>. Directories under non-commercial licenses have LICENSE files in them that start with the "LicenseRef-proprietary" SPDX tag. </p> <p>When you use the UCSC Genome Browser in your work, please cite one of our <a href="../goldenPath/pubs.html">publications</a>.</p> <br> <h1>Software: Download and installation of the graphical Genome Browser software and access to the source code is free for non-commercial uses but not commercial usage</h1> <p>Non-commercial usage for the Genome Browser graphical interface (primarily the "hgTracks" program), including download and local installation, aka setting up a <a href="../goldenPath/help/mirror.html">"mirror"</a>, is free. When you use the UCSC Genome Browser in your work, please cite one of our <a href="../goldenPath/pubs.html">publications</a>. </p> <p> For commercial use, a license is required for download and local installation of certain Genome Browser webserver CGI binaries and source code. In the source code repository, the respective directories are marked by special LICENSE files in them. As specified above, this applies to <code>kent/src/blat</code>, +<code>kent/src/isPcr</code>, <code>kent/src/jkOwnLib</code>, and the following subdirectories and programs under <code>kent/src/hg</code>. The majority of license protected files are the programs that produce the graphical images and the graphical user interface for the UCSC Genome Browser:</p> <br> -<p> -<code>cgilib das encode hgApi hgCollection hgFileSearch hgFileUi hgGateway hgGene hgGenome +<p><code>cgilib hgApi hgCollection hgFileSearch hgFileUi hgGateway hgGene hgGenome hgIntegrator hgPal hgPcr hgPhyloPlace hgPublicSessions hgSession hgSuggest hgTables hgTrackUi hgTracks hgVai hgc hubApi near visiGene liftOver</code> </p> <p> Also, BLAT and isPCR, if needed, are covered by a separate license (see below). This concerns -the source code directories <code>kent/src/blat</code> and <code>kent/src/jkOwnLib</code>. +the source code directories <code>kent/src/blat</code>, <code>kent/src/isPcr</code> +and <code>kent/src/jkOwnLib</code>. </p> <p> To purchase a commercial license for Genome Browser source code, LiftOver, GBiB, or GBiC, please visit the <a href="https://genome-store.ucsc.edu">Genome Browser store</a>. </p> We also have an <a href="../FAQ/FAQlicense.html">FAQ on licensing questions</a> which may help to clarify questions on how to license the code. We also have documentation on how to choose the best option for a local installation of a <a target=_blank href="../goldenPath/help/mirror.html">Genome Browser "mirror"</a>. +</p> <p> -If you would like to purchase more than 20 copies of the Genome Browser source code, please follow +If you would like to purchase the Genome Browser source code without going through our store, please follow these instructions: <ol> <li> Read and sign the <A HREF="gbLicense2020.pdf" target=_blank>licensing agreement</a>.</li> <li> Email a signed copy of the license agreement to the UCSC Office for IP Management (<A HREF="mailto:genomebrowser@ucsc.edu" >genomebrowser@ucsc.edu</A>). <!-- above address is genomebrowser at ucsc.edu --></li> <li> Follow the instructions in the license agreement for submitting the signed original copy and payment.</li> <li> After your license application has been processed, you will receive instructions for downloading the browser software and data.</li> </ol></p> @@ -152,18 +153,23 @@ <h1>Acknowledgements</h1> <p> This software includes software made by open-source projects: <ul> <li> htslib, see <a href="https://doi.org/10.1093/gigascience/giab007" target=_blank> Bonfield et al, 2021</a>: Copyright (C) 2012-2020 Genome Research Ltd., see <code>kent/src/htslib</code></li> <li> optimalLeaf, see <a href="https://www.ncbi.nlm.nih.gov/pubmed/12801867" target=_blank> Bar-Joseph et al. 2003</a>: released into the public domain by Ziv Bar-Joseph, see <code>kent/src/optimalLeaf</code>.</li> <li> Portions of this software are copyright 2020 The FreeType Project (www.freetype.org). All rights reserved.</li> <li> This software uses the (URW)++ fonts, Copyright 1999 by (URW)++ Design & Development. The files are not in git but can be obtained via rsync or ftp from hgdownload.soe.ucsc.edu/htdocs.</li> + <li>MySQL connectivity is provided via the MariaDB C client library provided under LGPL. <a href="https://mariadb.com/kb/en/the-mariadb-library/mariadb-connector-c/">https://mariadb.com/kb/en/the-mariadb-library/mariadb-connector-c/</a></li> + <li>This product includes software developed by the OpenSSL Project for use in the OpenSSL Toolkit + (http://www.openssl.org/). + This product includes cryptographic software written by Eric Young (eay@cryptsoft.com). + This product includes software written by Tim Hudson (tjh@cryptsoft.com).</li> </ul> </p> <!--#include virtual="$ROOT/inc/gbPageEnd.html" -->