2fe4f12161ca0be1920812033d25de23c45965d9
max
  Mon Nov 29 07:52:31 2021 -0800
adding colors to uniprot, after email from braney, refs #28560

diff --git src/hg/makeDb/trackDb/uniprot.ra src/hg/makeDb/trackDb/uniprot.ra
index 43448c9..1929081 100644
--- src/hg/makeDb/trackDb/uniprot.ra
+++ src/hg/makeDb/trackDb/uniprot.ra
@@ -8,63 +8,63 @@
 group genes
 visibility hide
 type bigBed 12 +
 exonNumbers off
 compositeTrack on
 allButtonPair on
 mouseOverField comments
 urls uniProtId="http://www.uniprot.org/uniprot/$$#section_features" pmids="https://www.ncbi.nlm.nih.gov/pubmed/$$"
 itemRgb on
 dataVersion /gbdb/$D/uniprot/version.txt
 html uniprotAlpha.html
 hideEmptySubtracks on
 
         track unipAliSwissprot
         shortLabel SwissProt Aln.
-        longLabel UCSC alignment of SwissProt proteins to genome
+        longLabel UCSC alignment of SwissProt proteins to genome (dark blue: main, annotated protein sequence)
         priority 1
         parent uniprot
-        visibility hide
+        visibility pack
         type bigPsl
         bigDataUrl /gbdb/$D/uniprot/unipAliSwissprot.bb
         searchIndex name,acc
         urls acc="https://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" refSeq="https://www.ncbi.nlm.nih.gov/nuccore/$$" refSeqProt="https://www.ncbi.nlm.nih.gov/protein/$$" ncbiGene="https://www.ncbi.nlm.nih.gov/gene/$$" entrezGene="https://www.ncbi.nlm.nih.gov/gene/$$" ensGene="https://www.ensembl.org/Gene/Summary?g=$$"
         labelFields name,acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt
         mouseOverField protFullNames
         itemRgb on
-        color 2,12,120
+        #color 2,12,120
         indelDoubleInsert on
         indelQueryInsert on
         baseColorTickColor contrastingColor
         baseColorUseCds given
         baseColorDefault genomicCodons
         showDiffBasesAllScales on
 
         track unipAliTrembl
         shortLabel TrEMBL Aln.
         longLabel UCSC alignment of TrEMBL proteins to genome
         priority 2
         parent uniprot off
         visibility hide
         type bigPsl
         bigDataUrl /gbdb/$D/uniprot/unipAliTrembl.bb
         searchIndex name,acc
         urls acc="https://www.uniprot.org/uniprot/$$" hgncId="https://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=$$" refseq="https://www.ncbi.nlm.nih.gov/nuccore/$$" refSeqProt="https://www.ncbi.nlm.nih.gov/protein/$$" ncbiGene="https://www.ncbi.nlm.nih.gov/gene/$$" entrezGene="https://www.ncbi.nlm.nih.gov/gene/$$" ensGene="https://www.ensembl.org/Gene/Summary?g=$$"
         labelFields name,acc,uniprotName,geneName,hgncSym,refSeq,refSeqProt,ensProt
         mouseOverField protFullNames
         itemRgb on
-        color 0,150,250
+        #color 0,150,250
         indelDoubleInsert on
         indelQueryInsert on
         baseColorTickColor contrastingColor
         baseColorUseCds given
         baseColorDefault genomicCodons
         showDiffBasesAllScales on
 
         track unipLocSignal
         shortLabel Signal Peptide
         longLabel UniProt Signal Peptides
         priority 3
         parent uniprot
         visibility dense
         type bigBed 12 +
         bigDataUrl /gbdb/$D/uniprot/unipLocSignal.bb