4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/mouseStuff/chainCleaner/chainCleaner.c src/hg/mouseStuff/chainCleaner/chainCleaner.c
index 0dde48d..9b7f72d 100644
--- src/hg/mouseStuff/chainCleaner/chainCleaner.c
+++ src/hg/mouseStuff/chainCleaner/chainCleaner.c
@@ -1,20 +1,20 @@
 /* Michael Hiller, 2015, MPI-CBG/MPI-PKS */
 /* This code is based on the UCSC kent source code, with the UCSC copyright below */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 
 
 /*   
 Definitions: 
 
 A break is a case where a chain is broken into >=2 pieces in the nets by a fill block of a higher scoring chain.
 breaking chain: chain that contains a local alignment block that breaks another lower-scoring chain in the nets into two or more pieces
 broken chain: lower-scoring chain that is broken into two or more pieces
 suspect: (also called "chain-breaking alignment" or CBA in the paper) the local alignment block(s) in the higher-scoring chain that causes the broken chain to be broken into pieces. 
          This block(s) is suspected to be a random or paralogous alignment. The breaking chain can have more than one suspect. 
 
 Example:
 X = fill (aligning region); - = gap (unaligning region)