4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/orthoMap/orthoMap.c src/hg/orthoMap/orthoMap.c index f3eed86..6c937f0 100644 --- src/hg/orthoMap/orthoMap.c +++ src/hg/orthoMap/orthoMap.c @@ -1,17 +1,17 @@ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ /** orthoMap - Map cDNAs from one genome to another. <pre> Using chains and nets to convert to find ortholgous regions, mrna, exons, bases. Introduction: ------------- Chains are alignments that have been chained together to form larger alignments. Nets are filtering of the chains such that each nucleotide is covered by at most one chain, which is the "best" chain for that region. Nets also group the chains in a tree like structure to organize them such that structures not usually present in standard alignments, such as inversions and insertions are represented. This document focuses on using the nets and chains to identify and map orthologs from one genome to another. Together the nets and chains can