4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/txGraph/txBedToGraph/makeGraph.c src/hg/txGraph/txBedToGraph/makeGraph.c index 0c9e6f8..7fbd1e7 100644 --- src/hg/txGraph/txBedToGraph/makeGraph.c +++ src/hg/txGraph/txBedToGraph/makeGraph.c @@ -1,17 +1,17 @@ /* Copyright (C) 2011 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ /* makeGraph - this module creates a txGraph from a list of * linkedBeds. The main steps to this process are: * 1) Create list of all unique start and end points in * beds. These are 'hard' if they are at a real splice * site and 'soft' otherwise. * 2) Create list of all unique edges. Edges include evidence * if any. * 3) Snap soft ends to nearby hard ends of compatible type. * 4) For half-soft edges, examine all other edges that share * the hard end, and and that are hard on both ends. Merge * the half-soft edge with the most similar such double-hard * edge, favoring extensions of edge over truncations. * 5) For edges that are half soft that can't yet be snapped, * merge all soft ends to a single point that is a consensus favoring