4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/lib/pslTransMap.c src/lib/pslTransMap.c index f082a5d..eebd4f3 100644 --- src/lib/pslTransMap.c +++ src/lib/pslTransMap.c @@ -1,20 +1,20 @@ /* pslTransMap - transitive mapping of an alignment another sequence, via a * common alignment */ /* Copyright (C) 2009 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #include "common.h" #include "pslTransMap.h" #include "psl.h" /* * Notes: * - This code is used with both large and small mapping psls. Large * psls used for doing cross-species mappings and small psl are used for * doing protein to mRNA mappings. This introduces some speed issues. For * chain mapping, a large amount of time is spent in getBlockMapping() * searching for the starting point of a mapping. However an optimization * to find the starting point, such as a binKeeper, could be inefficient * for a large number of small psls. Implementing such an optimzation * would have to be dependent on the type of mapping. The code was made * 16x faster for genome mappings by remembering the current location in