4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/utils/cpgIslandExt/cpg_lh.c src/utils/cpgIslandExt/cpg_lh.c index 1714b77..5451711 100644 --- src/utils/cpgIslandExt/cpg_lh.c +++ src/utils/cpgIslandExt/cpg_lh.c @@ -1,17 +1,17 @@ /* Copyright (C) 2012 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ /* Last edited: Jun 23 19:33 1995 (gos) */ /* date unknown (LaDeana Hillier) */ /* 3/23/04 (Angie Hinrichs): use obs/exp from G-G & F '87*/ /* cpg.c: CpG island finder. Larsen et al Genomics 13 1992 p1095-1107 "usually defined as >200bp with %GC > 50% and obs/exp CpG > 0.6". Here use running sum rather than window to score: if not CpG at postion i, then decrement runSum counter, but if CpG then runSum += CPGSCORE. Spans > threshold are searched for recursively. filename: fasta format concatenated sequence file: */