4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/utils/crisprKmers/crisprKmers.c src/utils/crisprKmers/crisprKmers.c index f1ff7ba..4e248d4 100644 --- src/utils/crisprKmers/crisprKmers.c +++ src/utils/crisprKmers/crisprKmers.c @@ -1,19 +1,19 @@ /* crisprKmers - find and annotate crispr sequences. */ /* Copyright (C) 2017 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ /* Theory of operation: a. scan given sequence (2bit or fa or fa.gz file) b. record all quide sequences, both positive and negative strands, on a linked list structure, 2bit encoding of the A C G T bases, with PAM sequence, strand and start coordinates, one linked list for each chromosome name. c. if a 'ranges' bed3 file is given, then divide up the linked list guide sequences into a 'query' list and a 'target' list. The 'query' list of guide sequences are those that have any overlap with the 'ranges' bed3 items. The 'target' list is an exclusive set of all the other guide sequences. d. Without 'ranges', the full list of sequences can be considerd as the 'query' sequences. e. Convert the linked list structures into memory arrays, get all