4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/cgilib/affy10KDetails.c src/hg/cgilib/affy10KDetails.c
index d1d6bcc..830f712 100644
--- src/hg/cgilib/affy10KDetails.c
+++ src/hg/cgilib/affy10KDetails.c
@@ -1,204 +1,204 @@
 /* affy10KDetails.c was originally generated by the autoSql program, which also 
  * generated affy10KDetails.h and affy10KDetails.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "affy10KDetails.h"
 
 
 void affy10KDetailsStaticLoad(char **row, struct affy10KDetails *ret)
 /* Load a row from affy10KDetails table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 ret->affyId = row[0];
 ret->rsId = row[1];
 ret->tscId = row[2];
 strcpy(ret->baseA, row[3]);
 strcpy(ret->baseB, row[4]);
 strcpy(ret->sequenceA, row[5]);
 strcpy(ret->sequenceB, row[6]);
 strcpy(ret->enzyme, row[7]);
 }
 
 struct affy10KDetails *affy10KDetailsLoad(char **row)
 /* Load a affy10KDetails from row fetched with select * from affy10KDetails
  * from database.  Dispose of this with affy10KDetailsFree(). */
 {
 struct affy10KDetails *ret;
 
 AllocVar(ret);
 ret->affyId = cloneString(row[0]);
 ret->rsId = cloneString(row[1]);
 ret->tscId = cloneString(row[2]);
 strcpy(ret->baseA, row[3]);
 strcpy(ret->baseB, row[4]);
 strcpy(ret->sequenceA, row[5]);
 strcpy(ret->sequenceB, row[6]);
 strcpy(ret->enzyme, row[7]);
 return ret;
 }
 
 struct affy10KDetails *affy10KDetailsLoadAll(char *fileName) 
 /* Load all affy10KDetails from a whitespace-separated file.
  * Dispose of this with affy10KDetailsFreeList(). */
 {
 struct affy10KDetails *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = affy10KDetailsLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct affy10KDetails *affy10KDetailsLoadAllByChar(char *fileName, char chopper) 
 /* Load all affy10KDetails from a chopper separated file.
  * Dispose of this with affy10KDetailsFreeList(). */
 {
 struct affy10KDetails *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = affy10KDetailsLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct affy10KDetails *affy10KDetailsLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all affy10KDetails from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with affy10KDetailsFreeList(). */
 {
 struct affy10KDetails *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     el = affy10KDetailsLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void affy10KDetailsSaveToDb(struct sqlConnection *conn, struct affy10KDetails *el, char *tableName, int updateSize)
 /* Save affy10KDetails as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s','%s','%s','%s')", 
 	tableName,  el->affyId,  el->rsId,  el->tscId,  el->baseA,  el->baseB,  el->sequenceA,  el->sequenceB,  el->enzyme);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 struct affy10KDetails *affy10KDetailsCommaIn(char **pS, struct affy10KDetails *ret)
 /* Create a affy10KDetails out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new affy10KDetails */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->affyId = sqlStringComma(&s);
 ret->rsId = sqlStringComma(&s);
 ret->tscId = sqlStringComma(&s);
 sqlFixedStringComma(&s, ret->baseA, sizeof(ret->baseA));
 sqlFixedStringComma(&s, ret->baseB, sizeof(ret->baseB));
 sqlFixedStringComma(&s, ret->sequenceA, sizeof(ret->sequenceA));
 sqlFixedStringComma(&s, ret->sequenceB, sizeof(ret->sequenceB));
 sqlFixedStringComma(&s, ret->enzyme, sizeof(ret->enzyme));
 *pS = s;
 return ret;
 }
 
 void affy10KDetailsFree(struct affy10KDetails **pEl)
 /* Free a single dynamically allocated affy10KDetails such as created
  * with affy10KDetailsLoad(). */
 {
 struct affy10KDetails *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->affyId);
 freeMem(el->rsId);
 freeMem(el->tscId);
 freez(pEl);
 }
 
 void affy10KDetailsFreeList(struct affy10KDetails **pList)
 /* Free a list of dynamically allocated affy10KDetails's */
 {
 struct affy10KDetails *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     affy10KDetailsFree(&el);
     }
 *pList = NULL;
 }
 
 void affy10KDetailsOutput(struct affy10KDetails *el, FILE *f, char sep, char lastSep) 
 /* Print out affy10KDetails.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->affyId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->rsId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->tscId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->baseA);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->baseB);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->sequenceA);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->sequenceB);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->enzyme);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */