4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/cgilib/genomicDups.c src/hg/cgilib/genomicDups.c
index 542058e..f69f424 100644
--- src/hg/cgilib/genomicDups.c
+++ src/hg/cgilib/genomicDups.c
@@ -1,151 +1,151 @@
 /* genomicDups.c was originally generated by the autoSql program, which also 
  * generated genomicDups.h and genomicDups.sql.  This module links the database and the RAM 
  * representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "jksql.h"
 #include "genomicDups.h"
 
 
 void genomicDupsStaticLoad(char **row, struct genomicDups *ret)
 /* Load a row from genomicDups table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlUnsigned(row[4]);
 strcpy(ret->strand, row[5]);
 ret->otherChrom = row[6];
 ret->otherStart = sqlUnsigned(row[7]);
 ret->otherEnd = sqlUnsigned(row[8]);
 ret->alignB = sqlUnsigned(row[9]);
 ret->matchB = sqlUnsigned(row[10]);
 ret->mismatchB = sqlUnsigned(row[11]);
 ret->fracMatch = atof(row[12]);
 ret->jcK = atof(row[13]);
 }
 
 struct genomicDups *genomicDupsLoad(char **row)
 /* Load a genomicDups from row fetched with select * from genomicDups
  * from database.  Dispose of this with genomicDupsFree(). */
 {
 struct genomicDups *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 strcpy(ret->strand, row[5]);
 ret->otherChrom = cloneString(row[6]);
 ret->otherStart = sqlUnsigned(row[7]);
 ret->otherEnd = sqlUnsigned(row[8]);
 ret->alignB = sqlUnsigned(row[9]);
 ret->matchB = sqlUnsigned(row[10]);
 ret->mismatchB = sqlUnsigned(row[11]);
 ret->fracMatch = atof(row[12]);
 ret->jcK = atof(row[13]);
 return ret;
 }
 
 struct genomicDups *genomicDupsCommaIn(char **pS, struct genomicDups *ret)
 /* Create a genomicDups out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new genomicDups */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->otherChrom = sqlStringComma(&s);
 ret->otherStart = sqlUnsignedComma(&s);
 ret->otherEnd = sqlUnsignedComma(&s);
 ret->alignB = sqlUnsignedComma(&s);
 ret->matchB = sqlUnsignedComma(&s);
 ret->mismatchB = sqlUnsignedComma(&s);
 ret->fracMatch = sqlSignedComma(&s);
 ret->jcK = sqlSignedComma(&s);
 *pS = s;
 return ret;
 }
 
 void genomicDupsFree(struct genomicDups **pEl)
 /* Free a single dynamically allocated genomicDups such as created
  * with genomicDupsLoad(). */
 {
 struct genomicDups *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->otherChrom);
 freez(pEl);
 }
 
 void genomicDupsFreeList(struct genomicDups **pList)
 /* Free a list of dynamically allocated genomicDups's */
 {
 struct genomicDups *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     genomicDupsFree(&el);
     }
 *pList = NULL;
 }
 
 void genomicDupsOutput(struct genomicDups *el, FILE *f, char sep, char lastSep) 
 /* Print out genomicDups.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->otherChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->otherStart);
 fputc(sep,f);
 fprintf(f, "%u", el->otherEnd);
 fputc(sep,f);
 fprintf(f, "%u", el->alignB);
 fputc(sep,f);
 fprintf(f, "%u", el->matchB);
 fputc(sep,f);
 fprintf(f, "%u", el->mismatchB);
 fputc(sep,f);
 fprintf(f, "%f", el->fracMatch);
 fputc(sep,f);
 fprintf(f, "%f", el->jcK);
 fputc(lastSep,f);
 }