4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/cgilib/transMapSrc.c src/hg/cgilib/transMapSrc.c
index b57ef80..596212e 100644
--- src/hg/cgilib/transMapSrc.c
+++ src/hg/cgilib/transMapSrc.c
@@ -1,173 +1,173 @@
 /* transMapSrc.c was originally generated by the autoSql program, which also 
  * generated transMapSrc.h and transMapSrc.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "transMapSrc.h"
 
 
 char *transMapSrcCommaSepFieldNames = "db,id,chrom,chromStart,chromEnd,strand,ident,aligned";
 
 void transMapSrcStaticLoad(char **row, struct transMapSrc *ret)
 /* Load a row from transMapSrc table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 safecpy(ret->db, sizeof(ret->db), row[0]);
 ret->id = row[1];
 ret->chrom = row[2];
 ret->chromStart = sqlUnsigned(row[3]);
 ret->chromEnd = sqlUnsigned(row[4]);
 ret->strand = row[5][0];
 ret->ident = sqlFloat(row[6]);
 ret->aligned = sqlFloat(row[7]);
 }
 
 struct transMapSrc *transMapSrcLoad(char **row)
 /* Load a transMapSrc from row fetched with select * from transMapSrc
  * from database.  Dispose of this with transMapSrcFree(). */
 {
 struct transMapSrc *ret;
 
 AllocVar(ret);
 safecpy(ret->db, sizeof(ret->db), row[0]);
 ret->id = cloneString(row[1]);
 ret->chrom = cloneString(row[2]);
 ret->chromStart = sqlUnsigned(row[3]);
 ret->chromEnd = sqlUnsigned(row[4]);
 ret->strand = row[5][0];
 ret->ident = sqlFloat(row[6]);
 ret->aligned = sqlFloat(row[7]);
 return ret;
 }
 
 struct transMapSrc *transMapSrcLoadAll(char *fileName) 
 /* Load all transMapSrc from a whitespace-separated file.
  * Dispose of this with transMapSrcFreeList(). */
 {
 struct transMapSrc *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = transMapSrcLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transMapSrc *transMapSrcLoadAllByChar(char *fileName, char chopper) 
 /* Load all transMapSrc from a chopper separated file.
  * Dispose of this with transMapSrcFreeList(). */
 {
 struct transMapSrc *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = transMapSrcLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct transMapSrc *transMapSrcCommaIn(char **pS, struct transMapSrc *ret)
 /* Create a transMapSrc out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new transMapSrc */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 sqlFixedStringComma(&s, ret->db, sizeof(ret->db));
 ret->id = sqlStringComma(&s);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, &(ret->strand), sizeof(ret->strand));
 ret->ident = sqlFloatComma(&s);
 ret->aligned = sqlFloatComma(&s);
 *pS = s;
 return ret;
 }
 
 void transMapSrcFree(struct transMapSrc **pEl)
 /* Free a single dynamically allocated transMapSrc such as created
  * with transMapSrcLoad(). */
 {
 struct transMapSrc *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->id);
 freeMem(el->chrom);
 freez(pEl);
 }
 
 void transMapSrcFreeList(struct transMapSrc **pList)
 /* Free a list of dynamically allocated transMapSrc's */
 {
 struct transMapSrc *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     transMapSrcFree(&el);
     }
 *pList = NULL;
 }
 
 void transMapSrcOutput(struct transMapSrc *el, FILE *f, char sep, char lastSep) 
 /* Print out transMapSrc.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->db);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->id);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%c", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%g", el->ident);
 fputc(sep,f);
 fprintf(f, "%g", el->aligned);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 
 struct transMapSrc *transMapSrcQuery(struct sqlConnection *srcConn,
                                      char *table, char *srcDb, char *srcId)
 /* load a single transMapSrc object for an srcDb and srcId from a table,
  * or error if not found */
 {
 return sqlQueryObjs(srcConn, (sqlLoadFunc)transMapSrcLoad,
                     sqlQueryMust|sqlQuerySingle,
                     "SELECT %-s FROM %s WHERE (db=\"%s\") and (id = \"%s\")",
                     transMapSrcCommaSepFieldNames, table, srcDb, srcId);
 }