4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/cirm/cdw/inc/cdwValid.h src/hg/cirm/cdw/inc/cdwValid.h index 3f757db..f54fad8 100644 --- src/hg/cirm/cdw/inc/cdwValid.h +++ src/hg/cirm/cdw/inc/cdwValid.h @@ -1,67 +1,67 @@ /* Things to do with CIRM validation. */ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef CDWVALID_H #define CDWVALID_H char *cdwCalcValidationKey(char *md5Hex, long long fileSize); /* calculate validation key to discourage faking of validation. Do freeMem on *result when done. */ void cdwValidateRcc(char *path); /* Validate a nanostring rcc file. */ void cdwValidateIdat(char *path); /* Validate illumina idat file. */ void cdwValidatePdf(char *path); /* Make sure PDF really is PDF */ void cdwValidateCram(char *path); /* Validate cram file. */ void cdwValidateJpg(char *path); /* Check jpg file is really jpg */ void cdwValidatePng(char *path); /* Check png file is really png */ void cdwValidateBamIndex(char *path); /* Check .bam.bai really is index. */ void cdwValidateTabixIndex(char *path); /* Check that a tabix index file (used for VCF files among other things) starts with right characters */ boolean cdwIsGzipped(char *path); /* Return TRUE if file at path starts with GZIP signature */ boolean cdwCheckEnrichedIn(char *enriched); /* return TRUE if value is allowed */ struct cdwBedType /* Contain information about our beds with defined as files like narrowPeak. */ { char *name; /* Base name without .as suffix */ int bedFields; /* Fields based on bed spec - come first */ int extraFields; /* Beds past bed spec */ }; extern struct cdwBedType cdwBedTypeTable[]; /* Table of supported bed types */ extern int cdwBedTypeCount; /* Size of above table. */ struct cdwBedType *cdwBedTypeFind(char *name); /* Return cdwBedType of given name. Abort if not found */ struct cdwBedType *cdwBedTypeMayFind(char *name); /* Return cdwBedType of given name, just return NULL if not found. */ void cdwValidateTagName(char *tag); /* Make sure that tag is one of the allowed ones. */ struct slPair *cdwFormatList(); /* Return list of formats. The name of the list items are the format names. * The vals are short descriptions. */ #endif /* CDWVALID_H */