4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/cirm/cdw/lib/cdwQaWigSpotFromRa.c src/hg/cirm/cdw/lib/cdwQaWigSpotFromRa.c
index 34cf0e1..ad79cfa 100644
--- src/hg/cirm/cdw/lib/cdwQaWigSpotFromRa.c
+++ src/hg/cirm/cdw/lib/cdwQaWigSpotFromRa.c
@@ -1,139 +1,139 @@
 /* Parser to read in a cdwQaWigSpot from a ra file where tags in ra file correspond to fields in a
  * struct. This program was generated by raToStructGen. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "obscure.h"
 #include "sqlNum.h"
 #include "sqlList.h"
 #include "ra.h"
 #include "raToStruct.h"
 #include "cdw.h"
 #include "cdwQaWigSpotFromRa.h"
 
 struct raToStructReader *cdwQaWigSpotRaReader()
 /* Make a raToStructReader for cdwQaWigSpot */
 {
 static char *fields[] = {
     "spotRatio",
     "enrichment",
     "basesInGenome",
     "basesInSpots",
     "sumSignal",
     "spotSumSignal",
     };
 static char *requiredFields[] = {
     "spotRatio",
     "enrichment",
     "basesInGenome",
     "basesInSpots",
     "sumSignal",
     "spotSumSignal",
     };
 return raToStructReaderNew("cdwQaWigSpot", ArraySize(fields), fields, ArraySize(requiredFields), requiredFields);
 }
 
 
 struct cdwQaWigSpot *cdwQaWigSpotFromNextRa(struct lineFile *lf, struct raToStructReader *reader)
 /* Return next stanza put into an cdwQaWigSpot. */
 {
 enum fields
     {
     spotRatioField,
     enrichmentField,
     basesInGenomeField,
     basesInSpotsField,
     sumSignalField,
     spotSumSignalField,
     };
 if (!raSkipLeadingEmptyLines(lf, NULL))
     return NULL;
 
 struct cdwQaWigSpot *el;
 AllocVar(el);
 
 bool *fieldsObserved = reader->fieldsObserved;
 bzero(fieldsObserved, reader->fieldCount);
 
 char *tag, *val;
 while (raNextTagVal(lf, &tag, &val, NULL))
     {
     struct hashEl *hel = hashLookup(reader->fieldIds, tag);
     if (hel != NULL)
         {
 	int id = ptToInt(hel->val);
 	if (fieldsObserved[id])
 	     errAbort("Duplicate tag %s line %d of %s\n", tag, lf->lineIx, lf->fileName);
 	fieldsObserved[id] = TRUE;
 	switch (id)
 	    {
 	    case spotRatioField:
 	        {
 	        el->spotRatio = sqlDouble(val);
 		break;
 	        }
 	    case enrichmentField:
 	        {
 	        el->enrichment = sqlDouble(val);
 		break;
 	        }
 	    case basesInGenomeField:
 	        {
 	        el->basesInGenome = sqlLongLong(val);
 		break;
 	        }
 	    case basesInSpotsField:
 	        {
 	        el->basesInSpots = sqlLongLong(val);
 		break;
 	        }
 	    case sumSignalField:
 	        {
 	        el->sumSignal = sqlDouble(val);
 		break;
 	        }
 	    case spotSumSignalField:
 	        {
 	        el->spotSumSignal = sqlDouble(val);
 		break;
 	        }
 	    default:
 	        internalErr();
 		break;
 	    }
 	}
     }
 
 raToStructReaderCheckRequiredFields(reader, lf);
 return el;
 }
 
 struct cdwQaWigSpot *cdwQaWigSpotLoadRa(char *fileName)
 /* Return list of all cdwQaWigSpot in ra file. */
 {
 struct raToStructReader *reader = cdwQaWigSpotRaReader();
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 struct cdwQaWigSpot *el, *list = NULL;
 while ((el = cdwQaWigSpotFromNextRa(lf, reader)) != NULL)
     slAddHead(&list, el);
 slReverse(&list);
 lineFileClose(&lf);
 raToStructReaderFree(&reader);
 return list;
 }
 
 struct cdwQaWigSpot *cdwQaWigSpotOneFromRa(char *fileName)
 /* Return cdwQaWigSpot in file and insist there be exactly one record. */
 {
 struct cdwQaWigSpot *one = cdwQaWigSpotLoadRa(fileName);
 if (one == NULL)
     errAbort("No data in %s", fileName);
 if (one->next != NULL)
     errAbort("Multiple records in %s", fileName);
 return one;
 }