4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/gisaid/gisaidTable/gisaidTable.h src/hg/gisaid/gisaidTable/gisaidTable.h index 529b0a7..a784eac 100644 --- src/hg/gisaid/gisaidTable/gisaidTable.h +++ src/hg/gisaid/gisaidTable/gisaidTable.h @@ -1,285 +1,285 @@ /* gisaidTable.h - interfaces to plug columns into gisaidTable. The must important * thing here is the column structure. */ /* Copyright (C) 2009 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef gisaidTable_H #define gisaidTable_H struct subjInfo /* subjInfo - subject info */ { struct subjInfo *next; char **fields; /* array of field values from gisaidSubjInfo. fields[0] is always subjId */ char *sortString; /* value to use if sorting as a string */ int sortInteger; /* value to use if sorting as an integer */ int sortDouble; /* value to use if sorting as an double */ }; struct column /* A column in the big table. The central data structure for * gisaidTable. */ { /* Data set during initialization that is guaranteed to be in each track. */ struct column *next; /* Next column. */ char *name; /* Column name, not allocated here. */ char *shortLabel; /* Column label. */ char *longLabel; /* Column description. */ float priority; /* Order displayed. */ boolean on; /* True if turned on. */ boolean defaultOn; /* On by default? */ boolean filterOn; /* True if its filter on. */ char *type; /* type of column */ struct hash* remap; /* hash for substitutes if type="remap" */ char *query; /* query if not in gisaidSubjInfo main table */ boolean filterDropDown; /* True if filter uses dropdown list. */ int colNo; /* index into subjInfo string array or -1 if not in gisaidSubjInfo table */ struct hash *settings; /* Settings from ra file. */ /* -- Methods -- */ boolean (*exists)(struct column *col, struct sqlConnection *conn); /* Return TRUE if column exists in database. */ char *(*cellVal)(struct column *col, struct subjInfo *si, struct sqlConnection *conn); /* Get value of one cell as string. FreeMem this when done. Note that * gp->chrom may be NULL legitimately. */ void (*cellPrint)(struct column *col, struct subjInfo *si, struct sqlConnection *conn); /* Print one cell of this column. Note that gp->chrom may be * NULL legitimately. */ void (*labelPrint)(struct column *col); /* Print the label in the label row. */ int (*tableColumns)(struct column *col); /* How many html columns this uses. */ struct subjInfo *(*advFilter)(struct column *col, struct sqlConnection *conn, struct subjInfo *inputList); /* Return list of positions for advanced filter. */ int (*sortCmp)(const void *va, const void *vb); /* Compare to sort rows based on value. */ void (*filterControls)(struct column *col, struct sqlConnection *conn); /* Print out controls for advanced filter. */ }; /* ---- global variables ---- */ extern struct cart *cart; /* This holds variables between clicks. */ extern char *database; /* Name of genome database - hg15, or the like. */ extern char *genome; /* Name of organism - mouse, human, etc. */ extern char *sortOn; /* Current sorted by column. */ extern int displayCount; /* Number of items to display. */ extern struct hash *columnHash; /* Hash of active columns keyed by name. */ /* ---- Cart Variables ---- */ #define dbVarName "db" /* Which assembly to use. */ #define orgVarName "org" /* Which organism to use. */ #define orderVarName "gisaidTable.order" /* Sorting column. */ #define confVarName "gisaidTable.do.configure" /* Configuration button */ #define advFilterVarName "gisaidTable.do.advFilter" /* Advanced filter */ #define countVarName "gisaidTable_count" /* How many items to display. */ #define getSeqHowVarName "gisaidTable.getSeqHow" /* How to get sequence. */ #define getSeqPageVarName "gisaidTable.do.getSeqPage" /* Button go to getSequence page. */ #define getSeqVarName "gisaidTable.do.getSeq" /* Button to get sequence. */ #define getTextVarName "gisaidTable.do.getText" /* Button to get as text. */ #define advFilterPrefix "gisaidTable.as." /* Prefix for advanced filter variables. */ #define advFilterPrefixI "gisaidTable.asi." /* Prefix for advanced filter variables not forcing search. */ #define advFilterVarName "gisaidTable.do.advFilter" /* Advanced filter */ #define advFilterClearVarName "gisaidTable.do.advFilterClear" /* Advanced filter clear all button. */ #define advFilterListVarName "gisaidTable.do.advFilterList" /* Advanced filter submit list. */ #define gisaidSubjList "gisaidTable.gisaidSubjList" #define gisaidSeqList "gisaidTable.gisaidSeqList" #define gisaidAaSeqList "gisaidTable.gisaidAaSeqList" #define keyWordUploadPrefix "gisaidTable.do.keyUp." /* Prefix for keyword uploads. */ #define keyWordPastePrefix "gisaidTable.do.keyPaste." /* Prefix for keyword paste-ins. */ #define keyWordPastedPrefix "gisaidTable.do.keyPasted." /* Prefix for keyword paste-ins. */ #define keyWordClearPrefix "gisaidTable.do.keyClear." /* Prefix for keyword paste-ins. */ #define colConfigPrefix "gisaidTable.col." /* Prefix for stuff set in configuration pages. */ #define colOrderVar "gisaidTable.colOrder" /* Order of columns. */ #define defaultConfName "gisaidTable.do.colDefault" /* Restore to default settings. */ #define hideAllConfName "gisaidTable.do.colHideAll" /* Hide all columns. */ #define showAllConfName "gisaidTable.do.colShowAll" /* Show all columns. */ #define redirectName "fromProg" /* cgi to redirect back to. */ /* ---- General purpose helper routines. ---- */ void saveSubjList(struct subjInfo *subjList); /* save the filtered list of subject gisaids to a file for other applications to use */ boolean gotAdvFilter(); /* Return TRUE if advanced filter variables are set. */ void doAdvFilter(struct sqlConnection *conn, struct column *colList); /* Put up advanced filter page. */ void doAdvFilterClear(struct sqlConnection *conn, struct column *colList); /* Clear variables in advanced filter page. */ void doAdvFilterList(struct sqlConnection *conn, struct column *colList); /* List gene names matching advanced filter. */ struct subjInfo *advFilterResults(struct column *colList, struct sqlConnection *conn); /* Get list of genes that pass all advanced filter filters. * If no filters are on this returns all genes. */ char *advFilterName(struct column *col, char *varName); /* Return variable name for advanced filter. */ char *advFilterVal(struct column *col, char *varName); /* Return value for advanced filter variable. Return NULL if it * doesn't exist or if it is "" */ char *advFilterNameI(struct column *col, char *varName); /* Return name for advanced filter that doesn't force search. */ void advFilterRemakeTextVar(struct column *col, char *varName, int size); /* Make a text field of given name and size filling it in with * the existing value if any. */ void advFilterAnyAllMenu(struct column *col, char *varName, boolean defaultAny); /* Make a drop-down menu with value all/any. */ boolean advFilterOrLogic(struct column *col, char *varName, boolean defaultOr); /* Return TRUE if user has selected 'all' from any/all menu */ void advFilterKeyUploadButton(struct column *col); /* Make a button for uploading keywords. */ struct column *advFilterKeyUploadPressed(struct column *colList); /* Return column where an key upload button was pressed, or * NULL if none. */ void doAdvFilterKeyUpload(struct sqlConnection *conn, struct column *colList, struct column *col); /* Handle upload keyword list button press in advanced filter form. */ void advFilterKeyPasteButton(struct column *col); /* Make a button for uploading keywords. */ struct column *advFilterKeyPastePressed(struct column *colList); /* Return column where an key upload button was pressed, or * NULL if none. */ void doAdvFilterKeyPaste(struct sqlConnection *conn, struct column *colList, struct column *col); /* Handle search keyword list button press in advanced filter form. */ struct column *advFilterKeyPastedPressed(struct column *colList); /* Return column where an key upload button was pressed, or * NULL if none. */ void doAdvFilterKeyPasted(struct sqlConnection *conn, struct column *colList, struct column *col); /* Handle search keyword list button press in advanced filter form. */ void advFilterKeyClearButton(struct column *col); /* Make a button for uploading keywords. */ struct column *advFilterKeyClearPressed(struct column *colList); /* Return column where an key upload button was pressed, or * NULL if none. */ void doAdvFilterKeyClear(struct sqlConnection *conn, struct column *colList, struct column *col); /* Handle clear keyword list button press in advanced filter form. */ void lookupAdvFilterControls(struct column *col, struct sqlConnection *conn); /* Print out controls for advanced filter on lookup column. */ void minMaxAdvFilterControls(struct column *col, struct sqlConnection *conn); /* Print out controls for min/max advanced filter. */ void dropDownAdvFilterControls(struct column *col, struct sqlConnection *conn); /* Print out controls for dropdown list filter. */ struct subjInfo *readAllSubjInfo(struct sqlConnection *conn, struct column *columns); /* Get all main table gisaidSubjInfo columns in use. */ boolean anyRealInCart(struct cart *cart, char *wild); /* Return TRUE if variables are set matching wildcard. */ void controlPanelStart(); /* Put up start of tables around a control panel. */ void controlPanelEnd(); /* Put up end of tables around a control panel. */ void hotLinks(); /* Make top bar */ void makeTitle(char *title, char *helpName); /* Make title bar. */ void doConfigure(struct sqlConnection *conn, struct column *colList); //, char *bumpVar); /* Configuration page. */ void doDefaultConfigure(struct sqlConnection *conn, struct column *colList ); /* Do configuration starting with defaults. */ void doConfigHideAll(struct sqlConnection *conn, struct column *colList); /* Respond to hide all button in configuration page. */ void doConfigShowAll(struct sqlConnection *conn, struct column *colList); /* Respond to show all button in configuration page. */ void fixSafariSpaceInQuotes(char *s); /* Safari on the Mac changes a space (ascii 32) to a * ascii 160 if it's inside of a single-quote in a * text input box!? This tuns it back to a 32. */ char *colVarName(struct column *col, char *prefix); /* Return variable name prefix.col->name. This is just a static * variable, so don't nest these calls. */ void colButton(struct column *col, char *prefix, char *label); /* Make a button named prefix.col->name with given label. */ struct column *colButtonPressed(struct column *colList, char *prefix); /* See if a button named prefix.column is pressed for some * column, and if so return the column, else NULL. */ void doGetSeqPage(struct sqlConnection *conn, struct column *colList); /* Put up the get sequence page. */ void doGetSeq(struct sqlConnection *conn, struct subjInfo *siList, char *how); #endif /* gisaidTable_H */