4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/hgGtexApi/hgGtexApi.c src/hg/hgGtexApi/hgGtexApi.c
index 810bb43..608d761 100644
--- src/hg/hgGtexApi/hgGtexApi.c
+++ src/hg/hgGtexApi/hgGtexApi.c
@@ -1,79 +1,79 @@
 /* Copyright (C) 2015 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 /* hgGtexApi - a web API to selected GTEx resources
  *
  * usage:  http://hgwdev-kate.gi.ucsc.edu/cgi-bin/hgGtexApi?gene=ENSG00000223972.4
  *
  * returns JSON in the format:
  *      { "id": <donor>, "tissue": <tissue>, "rpkm": <rpkm> }
 */
 
 #include "common.h"
 #include "hdb.h"
 #include "htmshell.h"
 #include "hPrint.h"
 #include "dystring.h"
 #include "api.h"
 #include "gtexSampleData.h"
 
 /* Requests */
 
 // TODO: Move to lib
 
 void gtexSampleDataJson(struct dyString *json, struct gtexSampleData *data)
 /* Print out gtexSampleData in JSON format. */
 {
 dyStringPrintf(json, "{");
 dyStringPrintf(json, "\"sample\":\"%s\"", data->sample);
 dyStringPrintf(json, ", ");
 dyStringPrintf(json, "\"tissue\":\"%s\"", data->tissue);
 dyStringPrintf(json, ", ");
 dyStringPrintf(json, "\"rpkm\":%.3f", data->score);
 dyStringPrintf(json, "}");
 }
 
 void geneResource(struct dyString *output)
 /* Retrieve gene expression for specified gene, and create JSON to output. 
    Initially supporting only cellType, dataType, and antibody (type= parameter).
    Allows specifying cv file with file= parameter
         e.g. http://genome.ucsc.edu/cgi-bin/hgApi?db=hg19&cmd=cv&file=cv.ra&type=dataType
 */
 {
 char query[256];
 struct sqlResult *sr;
 char **row;
 dyStringPrintf(output, "[\n");
 struct sqlConnection *conn = sqlConnect("hgFixed");
 char *gene = cgiString("gene");
 sqlSafef(query, sizeof(query), "select * from gtexSampleData where geneId='%s'", gene);
 sr = sqlGetResult(conn, query);
 struct gtexSampleData *data;
 while ((row = sqlNextRow(sr)) != NULL)
     {
     data = gtexSampleDataLoad(row);
     gtexSampleDataJson(output, data);
     dyStringAppend(output,",\n");
     }
 output->string[dyStringLen(output)-2] = '\n';
 output->string[dyStringLen(output)-1] = ']';
 dyStringPrintf(output, "\n");
 sqlDisconnect(&conn);
 }
 
 int main(int argc, char *argv[])
 /* Process command line */
 {
 long enteredMainTime = clock1000();
 struct dyString *output = newDyString(10000);
 
 cgiSpoof(&argc, argv);
 pushWarnHandler(htmlVaBadRequestAbort);
 pushAbortHandler(htmlVaBadRequestAbort);
 
 char *jsonp = cgiOptionalString("jsonp");
 geneResource(output);
 apiOut(dyStringContents(output), jsonp);
 cgiExitTime("hgGtexApi", enteredMainTime);
 return 0;
 }