4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/cgapSage/cgapSageLib.h src/hg/inc/cgapSage/cgapSageLib.h
index b1a5494..b182f8c 100644
--- src/hg/inc/cgapSage/cgapSageLib.h
+++ src/hg/inc/cgapSage/cgapSageLib.h
@@ -1,106 +1,106 @@
 /* cgapSageLib.h was originally generated by the autoSql program, which also 
  * generated cgapSageLib.c and cgapSageLib.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2007 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef CGAPSAGELIB_H
 #define CGAPSAGELIB_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define CGAPSAGELIB_NUM_COLS 21
 
 enum cgapSageLibSex
     {
     cgapSageLibMale = 0x0001,
     cgapSageLibFemale = 0x0002,
     };
 struct cgapSageLib
 /* CGAP SAGE libraries info */
     {
     struct cgapSageLib *next;  /* Next in singly linked list. */
     unsigned libId;	/* Numeric library ID */
     char *oldLibName;	/* Old library name */
     char *newLibName;	/* New library name */
     unsigned totalTags;	/* Total tags including linker */
     unsigned totalTagsNoLinker;	/* Total tags after eliminating linker */
     unsigned uniqueTags;	/* Unique tags */
     unsigned quality;	/* Library quality */
     char *tissue;	/* Organ/tissue */
     char *tissuePrep;	/* Tissue preparation */
     char *cellType;	/* Cell type */
     char *keywords;	/* Keywords */
     char *age;	/* Patient age */
     unsigned sex;	/* Patient sex */
     char *mutations;	/* Mutations */
     char *otherInfo;	/* Other information */
     char *tagEnzyme;	/* Tagging enzyme */
     char *anchorEnzyme;	/* Anchoring enzyme */
     char *cellSupplier;	/* Tissue or cell line supplier */
     char *libProducer;	/* Library producer */
     char *laboratory;	/* Laboratory */
     char *refs;	/* References */
     };
 
 void cgapSageLibStaticLoad(char **row, struct cgapSageLib *ret);
 /* Load a row from cgapSageLib table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct cgapSageLib *cgapSageLibLoad(char **row);
 /* Load a cgapSageLib from row fetched with select * from cgapSageLib
  * from database.  Dispose of this with cgapSageLibFree(). */
 
 struct cgapSageLib *cgapSageLibLoadAll(char *fileName);
 /* Load all cgapSageLib from whitespace-separated file.
  * Dispose of this with cgapSageLibFreeList(). */
 
 struct cgapSageLib *cgapSageLibLoadAllByChar(char *fileName, char chopper);
 /* Load all cgapSageLib from chopper separated file.
  * Dispose of this with cgapSageLibFreeList(). */
 
 #define cgapSageLibLoadAllByTab(a) cgapSageLibLoadAllByChar(a, '\t');
 /* Load all cgapSageLib from tab separated file.
  * Dispose of this with cgapSageLibFreeList(). */
 
 struct cgapSageLib *cgapSageLibLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all cgapSageLib from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with cgapSageLibFreeList(). */
 
 struct cgapSageLib *cgapSageLibCommaIn(char **pS, struct cgapSageLib *ret);
 /* Create a cgapSageLib out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new cgapSageLib */
 
 void cgapSageLibFree(struct cgapSageLib **pEl);
 /* Free a single dynamically allocated cgapSageLib such as created
  * with cgapSageLibLoad(). */
 
 void cgapSageLibFreeList(struct cgapSageLib **pList);
 /* Free a list of dynamically allocated cgapSageLib's */
 
 void cgapSageLibOutput(struct cgapSageLib *el, FILE *f, char sep, char lastSep);
 /* Print out cgapSageLib.  Separate fields with sep. Follow last field with lastSep. */
 
 #define cgapSageLibTabOut(el,f) cgapSageLibOutput(el,f,'\t','\n');
 /* Print out cgapSageLib as a line in a tab-separated file. */
 
 #define cgapSageLibCommaOut(el,f) cgapSageLibOutput(el,f,',',',');
 /* Print out cgapSageLib as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 struct hash *getTotTagsHash(struct cgapSageLib *libs);
 /* Read in the library file and hash up the total tags. */
 
 struct hash *getTotTagsHashFromFile(char *libFile);
 /* Load a file then call getTotTagsHash. */
 
 #endif /* CGAPSAGELIB_H */