4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/inc/chr18deletions.h src/hg/inc/chr18deletions.h index 6a42b00..df5e991 100644 --- src/hg/inc/chr18deletions.h +++ src/hg/inc/chr18deletions.h @@ -1,66 +1,66 @@ /* chr18deletions.h was originally generated by the autoSql program, which also * generated chr18deletions.c and chr18deletions.sql. This header links the database and * the RAM representation of objects. */ /* Copyright (C) 2002 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef CHR18DELETIONS_H #define CHR18DELETIONS_H struct chr18deletions /* Chromosome 18 deletion */ { struct chr18deletions *next; /* Next in singly linked list. */ char *chrom; /* Chromosome or 'unknown' */ int chromStart; /* Start position in chrom - negative 1 if unpositioned */ unsigned chromEnd; /* End position in chrom */ char *name; /* Name of STS marker */ unsigned score; /* Score of a marker = 1000/(# of placements) */ char strand[2]; /* Strand = or - */ unsigned ssCount; /* Number of small blocks */ unsigned *smallStarts; /* Small start positions */ unsigned seCount; /* Number of small blocks */ unsigned *smallEnds; /* Small end positions */ unsigned lsCount; /* Number of large blocks */ unsigned *largeStarts; /* Large start positions */ unsigned leCount; /* Number of large blocks */ unsigned *largeEnds; /* Large end positions */ }; struct chr18deletions *chr18deletionsLoad(char **row); /* Load a chr18deletions from row fetched with select * from chr18deletions * from database. Dispose of this with chr18deletionsFree(). */ struct chr18deletions *chr18deletionsLoadAll(char *fileName); /* Load all chr18deletions from a tab-separated file. * Dispose of this with chr18deletionsFreeList(). */ struct chr18deletions *chr18deletionsLoadWhere(struct sqlConnection *conn, char *table, char *where); /* Load all chr18deletions from table that satisfy where clause. The * where clause may be NULL in which case whole table is loaded * Dispose of this with chr18deletionsFreeList(). */ struct chr18deletions *chr18deletionsCommaIn(char **pS, struct chr18deletions *ret); /* Create a chr18deletions out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new chr18deletions */ void chr18deletionsFree(struct chr18deletions **pEl); /* Free a single dynamically allocated chr18deletions such as created * with chr18deletionsLoad(). */ void chr18deletionsFreeList(struct chr18deletions **pList); /* Free a list of dynamically allocated chr18deletions's */ void chr18deletionsOutput(struct chr18deletions *el, FILE *f, char sep, char lastSep); /* Print out chr18deletions. Separate fields with sep. Follow last field with lastSep. */ #define chr18deletionsTabOut(el,f) chr18deletionsOutput(el,f,'\t','\n'); /* Print out chr18deletions as a line in a tab-separated file. */ #define chr18deletionsCommaOut(el,f) chr18deletionsOutput(el,f,',',','); /* Print out chr18deletions as a comma separated list including final comma. */ #endif /* CHR18DELETIONS_H */