4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/inc/chromInfo.h src/hg/inc/chromInfo.h index 90b54a1..18a4d44 100644 --- src/hg/inc/chromInfo.h +++ src/hg/inc/chromInfo.h @@ -1,79 +1,79 @@ /* chromInfo.h was originally generated by the autoSql program, which also * generated chromInfo.c and chromInfo.sql. This header links the database and * the RAM representation of objects. */ /* Copyright (C) 2012 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef CHROMINFO_H #define CHROMINFO_H #define CHROMINFO_NUM_COLS 3 struct chromInfo /* Chromosome names and sizes */ { struct chromInfo *next; /* Next in singly linked list. */ char *chrom; /* Reference sequence chromosome or scaffold */ unsigned size; /* Chromosome size */ char *fileName; /* Chromosome file (raw one byte per base) */ }; void chromInfoStaticLoad(char **row, struct chromInfo *ret); /* Load a row from chromInfo table into ret. The contents of ret will * be replaced at the next call to this function. */ struct chromInfo *chromInfoLoad(char **row); /* Load a chromInfo from row fetched with select * from chromInfo * from database. Dispose of this with chromInfoFree(). */ struct chromInfo *chromInfoLoadAll(char *fileName); /* Load all chromInfo from whitespace-separated file. * Dispose of this with chromInfoFreeList(). */ struct chromInfo *chromInfoLoadAllByChar(char *fileName, char chopper); /* Load all chromInfo from chopper separated file. * Dispose of this with chromInfoFreeList(). */ #define chromInfoLoadAllByTab(a) chromInfoLoadAllByChar(a, '\t'); /* Load all chromInfo from tab separated file. * Dispose of this with chromInfoFreeList(). */ struct chromInfo *chromInfoCommaIn(char **pS, struct chromInfo *ret); /* Create a chromInfo out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new chromInfo */ void chromInfoFree(struct chromInfo **pEl); /* Free a single dynamically allocated chromInfo such as created * with chromInfoLoad(). */ void chromInfoFreeList(struct chromInfo **pList); /* Free a list of dynamically allocated chromInfo's */ void chromInfoOutput(struct chromInfo *el, FILE *f, char sep, char lastSep); /* Print out chromInfo. Separate fields with sep. Follow last field with lastSep. */ #define chromInfoTabOut(el,f) chromInfoOutput(el,f,'\t','\n'); /* Print out chromInfo as a line in a tab-separated file. */ #define chromInfoCommaOut(el,f) chromInfoOutput(el,f,',',','); /* Print out chromInfo as a comma separated list including final comma. */ /* -------------------------------- End autoSql Generated Code -------------------------------- */ boolean chromSeqFileExists(char *db, char *chrom); /* Check whether chromInfo exists for a database, find the path of the */ /* sequence file for this chromosome and check if the file exists. */ #endif /* CHROMINFO_H */ struct chromInfo *createChromInfoList(char *name, char *database); /* Load up chromosome information for chrom 'name'. * If name is NULL or "all" then load all chroms. * Similar to featureBits.c - could be moved to library */ struct hash *chromHashFromDatabase(char *db); /* read chrom info from database and return hash of name and size */ struct hash *chromHashFromFile(char *fileName); /* read chrom info from file and return hash of name and size */