4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/inc/chromInserts.h src/hg/inc/chromInserts.h index e7cc2b1..9fffe4a 100644 --- src/hg/inc/chromInserts.h +++ src/hg/inc/chromInserts.h @@ -1,44 +1,44 @@ /* chromInserts - this module helps handle centromeres, heterochromatic regions * and other large gaps in chromosomes. */ /* Copyright (C) 2003 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef CHROMINSERTS_H #define CHROMINSERTS_H struct bigInsert /* Describes a big insertion. */ { struct bigInsert *next; /* Next in list. */ char *ctgBefore; /* Contig before insert (or NULL) */ char *ctgAfter; /* Contig after insert (or NULL) */ int size; /* Insert size in bases. */ char *type; /* 'centromere' 'short_arm' etc. */ struct chromInserts *chrom; /* Pointer to associated chromosome. */ }; struct chromInserts /* List of inserts in a chromosome. */ { struct chromInserts *next; /* Next in list. */ char *chrom; /* Chromosome name, allocated in hash. */ struct bigInsert *terminal; /* Insert to finish chromosome with or NULL. */ struct bigInsert *insertList; /* List of contigs to insert before. */ }; struct chromInserts *chromInsertsRead(char *fileName, struct hash *insertsHash); /* Read in inserts file and process it. */ int chromInsertsGapSize(struct chromInserts *chromInserts, char *contig, boolean isFirst); /* Return size of gap before next contig. */ void chromInsertsSetDefaultGapSize(int size); /* Set default gap size. */ struct bigInsert *bigInsertBeforeContig(struct chromInserts *chromInserts, char *contig); /* Return the big insert (if any) before contig) */ #endif /* CHROMINSERTS_H */