4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/encode/encodePrimateAlleles.h src/hg/inc/encode/encodePrimateAlleles.h
index dd3e6a2..9826490 100644
--- src/hg/inc/encode/encodePrimateAlleles.h
+++ src/hg/inc/encode/encodePrimateAlleles.h
@@ -1,99 +1,99 @@
 /* encodePrimateAlleles.h was originally generated by the autoSql program, which also 
  * generated encodePrimateAlleles.c and encodePrimateAlleles.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef ENCODEPRIMATEALLELES_H
 #define ENCODEPRIMATEALLELES_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define ENCODEPRIMATEALLELES_NUM_COLS 18
 
 struct encodePrimateAlleles
 /* Primate (chimp and macaque) alleles for ENCODE resequencing SNPs */
     {
     struct encodePrimateAlleles *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* Start position in chrom */
     unsigned chromEnd;	/* End position in chrom */
     char *name;	/* Name of SNP - rsId or temporary name */
     unsigned score;	/* 0 */
     char strand;	/* + or - */
     char refAllele;	/* A, C, G, or T */
     char otherAllele;	/* A, C, G, or T */
     char *chimpChrom;	/* Chimp Chromosome */
     unsigned chimpPos;	/* End position in himpChrom */
     char chimpStrand;	/* + or - or . */
     char *chimpAllele;	/* A, C, G, T, a, c, g, t, or . */
     unsigned chimpQual;	/* Chimp quality score */
     char *rhesusChrom;	/* Rhesus Chromosome */
     unsigned rhesusPos;	/* End position in rhesusChrom */
     char rhesusStrand;	/* + or - or . */
     char *rhesusAllele;	/* A, C, G, T, a, c, g, t, or . */
     unsigned rhesusQual;	/* Rhesus quality score */
     };
 
 void encodePrimateAllelesStaticLoad(char **row, struct encodePrimateAlleles *ret);
 /* Load a row from encodePrimateAlleles table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct encodePrimateAlleles *encodePrimateAllelesLoad(char **row);
 /* Load a encodePrimateAlleles from row fetched with select * from encodePrimateAlleles
  * from database.  Dispose of this with encodePrimateAllelesFree(). */
 
 struct encodePrimateAlleles *encodePrimateAllelesLoadAll(char *fileName);
 /* Load all encodePrimateAlleles from whitespace-separated file.
  * Dispose of this with encodePrimateAllelesFreeList(). */
 
 struct encodePrimateAlleles *encodePrimateAllelesLoadAllByChar(char *fileName, char chopper);
 /* Load all encodePrimateAlleles from chopper separated file.
  * Dispose of this with encodePrimateAllelesFreeList(). */
 
 #define encodePrimateAllelesLoadAllByTab(a) encodePrimateAllelesLoadAllByChar(a, '\t');
 /* Load all encodePrimateAlleles from tab separated file.
  * Dispose of this with encodePrimateAllelesFreeList(). */
 
 struct encodePrimateAlleles *encodePrimateAllelesLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all encodePrimateAlleles from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with encodePrimateAllelesFreeList(). */
 
 void encodePrimateAllelesSaveToDb(struct sqlConnection *conn, struct encodePrimateAlleles *el, char *tableName, int updateSize);
 /* Save encodePrimateAlleles as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct encodePrimateAlleles *encodePrimateAllelesCommaIn(char **pS, struct encodePrimateAlleles *ret);
 /* Create a encodePrimateAlleles out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new encodePrimateAlleles */
 
 void encodePrimateAllelesFree(struct encodePrimateAlleles **pEl);
 /* Free a single dynamically allocated encodePrimateAlleles such as created
  * with encodePrimateAllelesLoad(). */
 
 void encodePrimateAllelesFreeList(struct encodePrimateAlleles **pList);
 /* Free a list of dynamically allocated encodePrimateAlleles's */
 
 void encodePrimateAllelesOutput(struct encodePrimateAlleles *el, FILE *f, char sep, char lastSep);
 /* Print out encodePrimateAlleles.  Separate fields with sep. Follow last field with lastSep. */
 
 #define encodePrimateAllelesTabOut(el,f) encodePrimateAllelesOutput(el,f,'\t','\n');
 /* Print out encodePrimateAlleles as a line in a tab-separated file. */
 
 #define encodePrimateAllelesCommaOut(el,f) encodePrimateAllelesOutput(el,f,',',',');
 /* Print out encodePrimateAlleles as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* ENCODEPRIMATEALLELES_H */