4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/encode/encodeRna.h src/hg/inc/encode/encodeRna.h
index b21d04e..1c09afb 100644
--- src/hg/inc/encode/encodeRna.h
+++ src/hg/inc/encode/encodeRna.h
@@ -1,95 +1,95 @@
 /* encodeRna.h was originally generated by the autoSql program, which also 
  * generated encodeRna.c and encodeRna.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef ENCODERNA_H
 #define ENCODERNA_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define ENCODERNA_NUM_COLS 14
 
 struct encodeRna
 /* Describes RNAs in the encode regions */
     {
     struct encodeRna *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome gene is on */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name of gene */
     unsigned score;	/* Score from 0 to 1000 */
     char *strand;	/* Strand + or - */
     char *source;	/* Source as in Sean Eddy's files. */
     char *type;	/* Type - snRNA, rRNA, tRNA, etc. */
     float fullScore;	/* Score as in Sean Eddys files. */
     unsigned isPsuedo;	/* TRUE(1) if psuedo, FALSE(0) otherwise */
     unsigned isRmasked;	/* TRUE(1) if >10% is RepeatMasked, FALSE(0) otherwise */
     unsigned isTranscribed;	/* TRUE(1) if >10% falls within a transfrag or TAR, FALSE(0) otherwise */
     unsigned isPrediction;	/* TRUE(1) if an evoFold prediction, FALSE(0) otherwise */
     char *transcribedIn;	/* List of experiments transcribed in */
     };
 
 void encodeRnaStaticLoad(char **row, struct encodeRna *ret);
 /* Load a row from encodeRna table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct encodeRna *encodeRnaLoad(char **row);
 /* Load a encodeRna from row fetched with select * from encodeRna
  * from database.  Dispose of this with encodeRnaFree(). */
 
 struct encodeRna *encodeRnaLoadAll(char *fileName);
 /* Load all encodeRna from whitespace-separated file.
  * Dispose of this with encodeRnaFreeList(). */
 
 struct encodeRna *encodeRnaLoadAllByChar(char *fileName, char chopper);
 /* Load all encodeRna from chopper separated file.
  * Dispose of this with encodeRnaFreeList(). */
 
 #define encodeRnaLoadAllByTab(a) encodeRnaLoadAllByChar(a, '\t');
 /* Load all encodeRna from tab separated file.
  * Dispose of this with encodeRnaFreeList(). */
 
 struct encodeRna *encodeRnaLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all encodeRna from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with encodeRnaFreeList(). */
 
 void encodeRnaSaveToDb(struct sqlConnection *conn, struct encodeRna *el, char *tableName, int updateSize);
 /* Save encodeRna as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct encodeRna *encodeRnaCommaIn(char **pS, struct encodeRna *ret);
 /* Create a encodeRna out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new encodeRna */
 
 void encodeRnaFree(struct encodeRna **pEl);
 /* Free a single dynamically allocated encodeRna such as created
  * with encodeRnaLoad(). */
 
 void encodeRnaFreeList(struct encodeRna **pList);
 /* Free a list of dynamically allocated encodeRna's */
 
 void encodeRnaOutput(struct encodeRna *el, FILE *f, char sep, char lastSep);
 /* Print out encodeRna.  Separate fields with sep. Follow last field with lastSep. */
 
 #define encodeRnaTabOut(el,f) encodeRnaOutput(el,f,'\t','\n');
 /* Print out encodeRna as a line in a tab-separated file. */
 
 #define encodeRnaCommaOut(el,f) encodeRnaOutput(el,f,',',',');
 /* Print out encodeRna as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* ENCODERNA_H */