4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/geneCheck.h src/hg/inc/geneCheck.h
index 0a56b1f..756df93 100644
--- src/hg/inc/geneCheck.h
+++ src/hg/inc/geneCheck.h
@@ -1,86 +1,86 @@
 /* geneCheck.h was originally generated by the autoSql program, which also 
  * generated geneCheck.c and geneCheck.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2006 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef GENECHECK_H
 #define GENECHECK_H
 
 #define GENECHECK_NUM_COLS 23
 
 struct geneCheck
 /* results from gene-check program */
     {
     struct geneCheck *next;  /* Next in singly linked list. */
     char *acc;	/* gene id or accession */
     char *chr;	/* chromosome */
     unsigned chrStart;	/* chromosome start */
     unsigned chrEnd;	/* chromosome end */
     char strand[2];	/* strand */
     char stat[5];	/* status of overall check: ok or err */
     char frame[13];	/* frame status: ok, bad, noCDS, mismatch, discontig */
     char start[3];	/* is there a start codon: ok or no */
     char stop[3];	/* is there a stop codon: ok or no */
     unsigned orfStop;	/* number of in-frame stop codons */
     unsigned cdsGap;	/* number of gaps in CDS */
     unsigned cdsMult3Gap;	/* number of CDS gaps that are a multiple of 3 */
     unsigned utrGap;	/* number of gaps in UTR */
     unsigned cdsSplice;	/* number of CDS introns with unknown splice sites */
     unsigned utrSplice;	/* number of CDS introns with unknown splice sites */
     unsigned numExons;	/* number of exons */
     unsigned numCds;	/* number of CDS exons */
     unsigned numUtr5;	/* number of 5'UTR exons */
     unsigned numUtr3;	/* number of 3'UTR exons */
     unsigned numCdsIntrons;	/* number of CDS introns */
     unsigned numUtrIntrons;	/* number of UTR introns */
     char nmd[5];	/* Is this an NMD candidate: ok or nmd */
     char *causes;	/* comma separated string with list of causes (for easy matching) */
     };
 
 void geneCheckStaticLoad(char **row, struct geneCheck *ret);
 /* Load a row from geneCheck table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct geneCheck *geneCheckLoad(char **row);
 /* Load a geneCheck from row fetched with select * from geneCheck
  * from database.  Dispose of this with geneCheckFree(). */
 
 struct geneCheck *geneCheckLoadAll(char *fileName);
 /* Load all geneCheck from whitespace-separated file.
  * Dispose of this with geneCheckFreeList(). */
 
 struct geneCheck *geneCheckLoadAllByChar(char *fileName, char chopper);
 /* Load all geneCheck from chopper separated file.
  * Dispose of this with geneCheckFreeList(). */
 
 #define geneCheckLoadAllByTab(a) geneCheckLoadAllByChar(a, '\t');
 /* Load all geneCheck from tab separated file.
  * Dispose of this with geneCheckFreeList(). */
 
 struct geneCheck *geneCheckCommaIn(char **pS, struct geneCheck *ret);
 /* Create a geneCheck out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new geneCheck */
 
 void geneCheckFree(struct geneCheck **pEl);
 /* Free a single dynamically allocated geneCheck such as created
  * with geneCheckLoad(). */
 
 void geneCheckFreeList(struct geneCheck **pList);
 /* Free a list of dynamically allocated geneCheck's */
 
 void geneCheckOutput(struct geneCheck *el, FILE *f, char sep, char lastSep);
 /* Print out geneCheck.  Separate fields with sep. Follow last field with lastSep. */
 
 #define geneCheckTabOut(el,f) geneCheckOutput(el,f,'\t','\n');
 /* Print out geneCheck as a line in a tab-separated file. */
 
 #define geneCheckCommaOut(el,f) geneCheckOutput(el,f,',',',');
 /* Print out geneCheck as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* GENECHECK_H */