4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/gwasCatalog.h src/hg/inc/gwasCatalog.h
index 3ed87ba..2bf1f21 100644
--- src/hg/inc/gwasCatalog.h
+++ src/hg/inc/gwasCatalog.h
@@ -1,90 +1,90 @@
 /* gwasCatalog.h was originally generated by the autoSql program, which also 
  * generated gwasCatalog.c and gwasCatalog.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef GWASCATALOG_H
 #define GWASCATALOG_H
 
 #define GWASCATALOG_NUM_COLS 22
 
 enum gwasCatalogCnv
     {
     gwasCatalogY = 0,
     gwasCatalogN = 1,
     };
 struct gwasCatalog
 /* NHGRI's collection of Genome-Wide Association Studies SNPs */
     {
     struct gwasCatalog *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* ID of SNP associated with trait */
     unsigned pubMedID;	/* PubMed ID of publication of the study */
     char *author;	/* First author of publication */
     char *pubDate;	/* Date of publication */
     char *journal;	/* Journal of publication */
     char *title;	/* Title of publication */
     char *trait;	/* Disease or trait assessed in study */
     char *initSample;	/* Initial sample size */
     char *replSample;	/* Replication sample size */
     char *region;	/* Chromosome band / region of SNP */
     char *genes;	/* Reported Gene(s) */
     char *riskAllele;	/* Strongest SNP-Risk Allele */
     char *riskAlFreq;	/* Risk Allele Frequency */
     char *pValue;	/* p-Value */
     char *pValueDesc;	/* p-Value Description */
     char *orOrBeta;	/* Odds ratio or beta */
     char *ci95;	/* 95% Confidence Interval */
     char *platform;	/* Platform and [SNPs passing QC] */
     enum gwasCatalogCnv cnv;	/* Y if Copy Number Variant */
     };
 
 void gwasCatalogStaticLoad(char **row, struct gwasCatalog *ret);
 /* Load a row from gwasCatalog table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct gwasCatalog *gwasCatalogLoad(char **row);
 /* Load a gwasCatalog from row fetched with select * from gwasCatalog
  * from database.  Dispose of this with gwasCatalogFree(). */
 
 struct gwasCatalog *gwasCatalogLoadAll(char *fileName);
 /* Load all gwasCatalog from whitespace-separated file.
  * Dispose of this with gwasCatalogFreeList(). */
 
 struct gwasCatalog *gwasCatalogLoadAllByChar(char *fileName, char chopper);
 /* Load all gwasCatalog from chopper separated file.
  * Dispose of this with gwasCatalogFreeList(). */
 
 #define gwasCatalogLoadAllByTab(a) gwasCatalogLoadAllByChar(a, '\t');
 /* Load all gwasCatalog from tab separated file.
  * Dispose of this with gwasCatalogFreeList(). */
 
 struct gwasCatalog *gwasCatalogCommaIn(char **pS, struct gwasCatalog *ret);
 /* Create a gwasCatalog out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new gwasCatalog */
 
 void gwasCatalogFree(struct gwasCatalog **pEl);
 /* Free a single dynamically allocated gwasCatalog such as created
  * with gwasCatalogLoad(). */
 
 void gwasCatalogFreeList(struct gwasCatalog **pList);
 /* Free a list of dynamically allocated gwasCatalog's */
 
 void gwasCatalogOutput(struct gwasCatalog *el, FILE *f, char sep, char lastSep);
 /* Print out gwasCatalog.  Separate fields with sep. Follow last field with lastSep. */
 
 #define gwasCatalogTabOut(el,f) gwasCatalogOutput(el,f,'\t','\n');
 /* Print out gwasCatalog as a line in a tab-separated file. */
 
 #define gwasCatalogCommaOut(el,f) gwasCatalogOutput(el,f,',',',');
 /* Print out gwasCatalog as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* GWASCATALOG_H */