4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/hapmapAlleles.h src/hg/inc/hapmapAlleles.h
index de4c2c0..62a075d 100644
--- src/hg/inc/hapmapAlleles.h
+++ src/hg/inc/hapmapAlleles.h
@@ -1,106 +1,106 @@
 /* hapmapAlleles.h was originally generated by the autoSql program, which also 
  * generated hapmapAlleles.c and hapmapAlleles.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2007 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef HAPMAPALLELES_H
 #define HAPMAPALLELES_H
 
 #define HAPMAPALLELES_NUM_COLS 12
 
 struct hapmapAlleles
 /* HapMap allele counts */
     {
     struct hapmapAlleles *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* Start position in chrom (0 based) */
     unsigned chromEnd;	/* End position in chrom (1 based) */
     char *name;	/* Reference SNP identifier from dbSnp */
     unsigned score;	/* Not used */
     char strand[2];	/* Which genomic strand contains the observed alleles */
     char *observed;	/* Observed string from genotype file */
     char allele1[2];	/* This allele has been observed */
     unsigned homoCount1;	/* Count of individuals who are homozygous for allele1 */
     char *allele2;	/* This allele may not have been observed */
     unsigned homoCount2;	/* Count of individuals who are homozygous for allele2 */
     unsigned heteroCount;	/* Count of individuals who are heterozygous */
     };
 
 void hapmapAllelesStaticLoad(char **row, struct hapmapAlleles *ret);
 /* Load a row from hapmapAlleles table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct hapmapAlleles *hapmapAllelesLoad(char **row);
 /* Load a hapmapAlleles from row fetched with select * from hapmapAlleles
  * from database.  Dispose of this with hapmapAllelesFree(). */
 
 struct hapmapAlleles *hapmapAllelesLoadAll(char *fileName);
 /* Load all hapmapAlleles from whitespace-separated file.
  * Dispose of this with hapmapAllelesFreeList(). */
 
 struct hapmapAlleles *hapmapAllelesLoadAllByChar(char *fileName, char chopper);
 /* Load all hapmapAlleles from chopper separated file.
  * Dispose of this with hapmapAllelesFreeList(). */
 
 #define hapmapAllelesLoadAllByTab(a) hapmapAllelesLoadAllByChar(a, '\t');
 /* Load all hapmapAlleles from tab separated file.
  * Dispose of this with hapmapAllelesFreeList(). */
 
 struct hapmapAlleles *hapmapAllelesCommaIn(char **pS, struct hapmapAlleles *ret);
 /* Create a hapmapAlleles out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new hapmapAlleles */
 
 void hapmapAllelesFree(struct hapmapAlleles **pEl);
 /* Free a single dynamically allocated hapmapAlleles such as created
  * with hapmapAllelesLoad(). */
 
 void hapmapAllelesFreeList(struct hapmapAlleles **pList);
 /* Free a list of dynamically allocated hapmapAlleles's */
 
 void hapmapAllelesOutput(struct hapmapAlleles *el, FILE *f, char sep, char lastSep);
 /* Print out hapmapAlleles.  Separate fields with sep. Follow last field with lastSep. */
 
 #define hapmapAllelesTabOut(el,f) hapmapAllelesOutput(el,f,'\t','\n');
 /* Print out hapmapAlleles as a line in a tab-separated file. */
 
 #define hapmapAllelesCommaOut(el,f) hapmapAllelesOutput(el,f,',',',');
 /* Print out hapmapAlleles as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 /* items for trackUi options and filters */
 
 #define HA_POP_MIXED "hapmapAlleles.isMixed"
 #define HA_POP_COUNT "hapmapAlleles.popCount"
 #define HA_TYPE "hapmapAlleles.polyType"
 #define HA_MIN_FREQ "hapmapAlleles.minorAlleleFreqMinimum"
 #define HA_MAX_FREQ "hapmapAlleles.minorAlleleFreqMaximum"
 #define HA_MIN_HET "hapmapAlleles.hetMinimum"
 #define HA_MAX_HET "hapmapAlleles.hetMaximum"
 #define HA_MONO "hapmapAlleles.monomorphic"
 #define HA_CHIMP "hapmapAlleles.chimp"
 #define HA_CHIMP_QUAL "hapmapAlleles.chimpQualScore"
 #define HA_MACAQUE "hapmapAlleles.macaque"
 #define HA_MACAQUE_QUAL "hapmapAlleles.macaqueQualScore"
 
 #define HA_POP_MIXED_DEFAULT "any"
 #define HA_POP_COUNT_DEFAULT "any"
 #define HA_TYPE_DEFAULT      "any"
 
 #define HA_MIN_FREQ_DEFAULT  "0.0"
 #define HA_MAX_FREQ_DEFAULT  "0.5"
 #define HA_MIN_HET_DEFAULT   "0.0"
 #define HA_MAX_HET_DEFAULT   "0.5"
 
 #define HA_MONO_DEFAULT      "any"
 
 #define HA_CHIMP_DEFAULT     "any"
 #define HA_CHIMP_QUAL_DEFAULT "0"
 #define HA_MACAQUE_DEFAULT   "any"
 #define HA_MACAQUE_QUAL_DEFAULT "0"
 
 #endif /* HAPMAPALLELES_H */