4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/hapmapSnpsCombined.h src/hg/inc/hapmapSnpsCombined.h
index 4a348ac..166f1b7 100644
--- src/hg/inc/hapmapSnpsCombined.h
+++ src/hg/inc/hapmapSnpsCombined.h
@@ -1,94 +1,94 @@
 /* hapmapSnpsCombined.h was originally generated by the autoSql program, which also 
  * generated hapmapSnpsCombined.c and hapmapSnpsCombined.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2007 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef HAPMAPSNPSCOMBINED_H
 #define HAPMAPSNPSCOMBINED_H
 
 #define HAPMAPSNPSCOMBINED_NUM_COLS 21
 
 struct hapmapSnpsCombined
 /* HapMap allele counts by population */
     {
     struct hapmapSnpsCombined *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* Start position in chrom (0 based) */
     unsigned chromEnd;	/* End position in chrom (1 based) */
     char *name;	/* Reference SNP identifier from dbSnp */
     unsigned score;	/* Not used */
     char strand[2];	/* Which genomic strand contains the observed alleles */
     char *observed;	/* Observed string from genotype file */
     char allele1[2];	/* This allele has been observed */
     unsigned homoCount1CEU;	/* Count of CEU individuals who are homozygous for allele1 */
     unsigned homoCount1CHB;	/* Count of CHB individuals who are homozygous for allele1 */
     unsigned homoCount1JPT;	/* Count of JPT individuals who are homozygous for allele1 */
     unsigned homoCount1YRI;	/* Count of YRI individuals who are homozygous for allele1 */
     char *allele2;	/* This allele may not have been observed */
     unsigned homoCount2CEU;	/* Count of CEU individuals who are homozygous for allele2 */
     unsigned homoCount2CHB;	/* Count of CHB individuals who are homozygous for allele2 */
     unsigned homoCount2JPT;	/* Count of JPT individuals who are homozygous for allele2 */
     unsigned homoCount2YRI;	/* Count of YRI individuals who are homozygous for allele2 */
     unsigned heteroCountCEU;	/* Count of CEU individuals who are heterozygous */
     unsigned heteroCountCHB;	/* Count of CHB individuals who are heterozygous */
     unsigned heteroCountJPT;	/* Count of JPT individuals who are heterozygous */
     unsigned heteroCountYRI;	/* Count of YRI individuals who are heterozygous */
     };
 
 void hapmapSnpsCombinedStaticLoad(char **row, struct hapmapSnpsCombined *ret);
 /* Load a row from hapmapSnpsCombined table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct hapmapSnpsCombined *hapmapSnpsCombinedLoad(char **row);
 /* Load a hapmapSnpsCombined from row fetched with select * from hapmapSnpsCombined
  * from database.  Dispose of this with hapmapSnpsCombinedFree(). */
 
 struct hapmapSnpsCombined *hapmapSnpsCombinedLoadAll(char *fileName);
 /* Load all hapmapSnpsCombined from whitespace-separated file.
  * Dispose of this with hapmapSnpsCombinedFreeList(). */
 
 struct hapmapSnpsCombined *hapmapSnpsCombinedLoadAllByChar(char *fileName, char chopper);
 /* Load all hapmapSnpsCombined from chopper separated file.
  * Dispose of this with hapmapSnpsCombinedFreeList(). */
 
 #define hapmapSnpsCombinedLoadAllByTab(a) hapmapSnpsCombinedLoadAllByChar(a, '\t');
 /* Load all hapmapSnpsCombined from tab separated file.
  * Dispose of this with hapmapSnpsCombinedFreeList(). */
 
 struct hapmapSnpsCombined *hapmapSnpsCombinedCommaIn(char **pS, struct hapmapSnpsCombined *ret);
 /* Create a hapmapSnpsCombined out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new hapmapSnpsCombined */
 
 void hapmapSnpsCombinedFree(struct hapmapSnpsCombined **pEl);
 /* Free a single dynamically allocated hapmapSnpsCombined such as created
  * with hapmapSnpsCombinedLoad(). */
 
 void hapmapSnpsCombinedFreeList(struct hapmapSnpsCombined **pList);
 /* Free a list of dynamically allocated hapmapSnpsCombined's */
 
 void hapmapSnpsCombinedOutput(struct hapmapSnpsCombined *el, FILE *f, char sep, char lastSep);
 /* Print out hapmapSnpsCombined.  Separate fields with sep. Follow last field with lastSep. */
 
 #define hapmapSnpsCombinedTabOut(el,f) hapmapSnpsCombinedOutput(el,f,'\t','\n');
 /* Print out hapmapSnpsCombined as a line in a tab-separated file. */
 
 #define hapmapSnpsCombinedCommaOut(el,f) hapmapSnpsCombinedOutput(el,f,',',',');
 /* Print out hapmapSnpsCombined as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 int getPopCount(struct hapmapSnpsCombined *thisItem);
 
 boolean isMixed(struct hapmapSnpsCombined *thisItem);
 /* return TRUE if different populations have a different major allele */
 
 void printOne(struct hapmapSnpsCombined *thisItem);
 
 int calcHet(struct hapmapSnpsCombined *thisItem);
 /* calculate heterozygosity (2pq) */
 
 #endif /* HAPMAPSNPSCOMBINED_H */