4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/liftOverChain.h src/hg/inc/liftOverChain.h
index ff8f5cf..7f0b36b 100644
--- src/hg/inc/liftOverChain.h
+++ src/hg/inc/liftOverChain.h
@@ -1,98 +1,98 @@
 /* liftOverChain.h was originally generated by the autoSql program, which also 
  * generated liftOverChain.c and liftOverChain.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef LIFTOVERCHAIN_H
 #define LIFTOVERCHAIN_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define LIFTOVERCHAIN_NUM_COLS 9
 
 struct liftOverChain
 /* Chain file for lifting annotations between assemblies */
     {
     struct liftOverChain *next;  /* Next in singly linked list. */
     char *fromDb;	/* Short name of 'from' database.  'hg15' or the like */
     char *toDb;	/* Short name of 'to' database.  'hg16' or the like */
     char *path;	/* Path to chain file */
     float minMatch;	/* Minimum ratio of bases that must remap. */
     unsigned minChainT;	/* Minimum chain size in target. */
     unsigned minSizeQ;	/* Minimum chain size in query. */
     char multiple[2];	/* Use -multiple by default. */
     float minBlocks;	/* Min ratio of alignment blocks/exons that must map. */
     char fudgeThick[2];	/* If thickStart/thickEnd is not mapped, use the closest mapped base. */
     };
 
 void liftOverChainStaticLoad(char **row, struct liftOverChain *ret);
 /* Load a row from liftOverChain table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct liftOverChain *liftOverChainLoad(char **row);
 /* Load a liftOverChain from row fetched with select * from liftOverChain
  * from database.  Dispose of this with liftOverChainFree(). */
 
 struct liftOverChain *liftOverChainLoadAll(char *fileName);
 /* Load all liftOverChain from whitespace-separated file.
  * Dispose of this with liftOverChainFreeList(). */
 
 struct liftOverChain *liftOverChainLoadAllByChar(char *fileName, char chopper);
 /* Load all liftOverChain from chopper separated file.
  * Dispose of this with liftOverChainFreeList(). */
 
 #define liftOverChainLoadAllByTab(a) liftOverChainLoadAllByChar(a, '\t');
 /* Load all liftOverChain from tab separated file.
  * Dispose of this with liftOverChainFreeList(). */
 
 struct liftOverChain *liftOverChainLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all liftOverChain from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with liftOverChainFreeList(). */
 
 void liftOverChainSaveToDb(struct sqlConnection *conn, struct liftOverChain *el, char *tableName, int updateSize);
 /* Save liftOverChain as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct liftOverChain *liftOverChainCommaIn(char **pS, struct liftOverChain *ret);
 /* Create a liftOverChain out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new liftOverChain */
 
 void liftOverChainFree(struct liftOverChain **pEl);
 /* Free a single dynamically allocated liftOverChain such as created
  * with liftOverChainLoad(). */
 
 void liftOverChainFreeList(struct liftOverChain **pList);
 /* Free a list of dynamically allocated liftOverChain's */
 
 void liftOverChainOutput(struct liftOverChain *el, FILE *f, char sep, char lastSep);
 /* Print out liftOverChain.  Separate fields with sep. Follow last field with lastSep. */
 
 #define liftOverChainTabOut(el,f) liftOverChainOutput(el,f,'\t','\n');
 /* Print out liftOverChain as a line in a tab-separated file. */
 
 #define liftOverChainCommaOut(el,f) liftOverChainOutput(el,f,',',',');
 /* Print out liftOverChain as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 boolean liftOverChainExists(struct sqlConnection *conn, char *tableName,
                                 char *fromDb, char *toDb);
 /* Return TRUE if row where fromDb and toDb match */
 
 void liftOverChainRemove(struct sqlConnection *conn, char *tableName,
                                 char *fromDb, char *toDb);
 /* Remove rows where fromDb and toDb match */
 
 #endif /* LIFTOVERCHAIN_H */