4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/inc/longRange.h src/hg/inc/longRange.h index f9280d1..71e1ef2 100644 --- src/hg/inc/longRange.h +++ src/hg/inc/longRange.h @@ -1,60 +1,60 @@ /* longRange - Long Range Interaction Format functions */ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef LONGRANGE_H #define LONGRANGE_H #include "common.h" #include "cheapcgi.h" #include "cart.h" #include "trackDb.h" #include "bed.h" #define LONG_HEIGHT "heightPer" #define LONG_MINHEIGHT 20 #define LONG_MAXHEIGHT 300 #define LONG_DEFHEIGHT "200" #define LONG_MINSCORE "minScore" #define LONG_DEFMINSCORE "0" struct longRange { struct longRange *next; char *name; // for longTabix, Wash U field 4 (other region pos + interaction value) // Unused in GB // info for 'start' (lower genomic coords) region unsigned s; // position of 'center', 0-based unsigned sw; // width in bp int sOrient; // strand char *sChrom; // chrom // info for 'end' (higher genomic coords) region unsigned e; unsigned ew; int eOrient; char *eChrom; boolean hasColor; // Ensembl extension to Wash U format -- // RGB color can be supplied instead of score unsigned rgb; // RGB color for display double score; // interaction numeric value; e.g. strength of interaction unsigned id; // unique integer identifier of an item in a longTabix file (not interaction id) // Required in Wash U spec. Unsed at UCSC, except for details page }; void longRangeCfgUi(struct cart *cart, struct trackDb *tdb, char *name, char *title, boolean boxed); /* Complete track controls for long range interaction. */ struct longRange *parseLongTabix(struct bed *beds, unsigned *maxWidth, double minScore); /* Parse longTabix format into longRange structures */ struct asObject *longTabixAsObj(); /* Return asObject describing fields of longTabix file. */ int longRangeCmp(const void *va, const void *vb); /* Compare based on coord position of s field */ #endif//def LONGRANGE_H