4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/mammalPsg.h src/hg/inc/mammalPsg.h
index a804b7a..ca35340 100644
--- src/hg/inc/mammalPsg.h
+++ src/hg/inc/mammalPsg.h
@@ -1,93 +1,93 @@
 /* mammalPsg.h was originally generated by the autoSql program, which also 
  * generated mammalPsg.c and mammalPsg.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2008 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef MAMMALPSG_H
 #define MAMMALPSG_H
 
 #define MAMMALPSG_NUM_COLS 34
 
 struct mammalPsg
 /* Browser extensible data (12 fields) plus the information on mammalian positive selection. */
     {
     struct mammalPsg *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome (or contig, scaffold, etc.) */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Name of item */
     unsigned score;	/* 400 for P<0.05 on any test; 700 fdr significant under any test; 1000 fdr significant under test A */
     char strand[2];	/* + or - */
     unsigned thickStart;	/* Start of where display should be thick (start codon) */
     unsigned thickEnd;	/* End of where display should be thick (stop codon) */
     unsigned reserved;	/* Used as itemRgb as of 2004-11-22 */
     int blockCount;	/* Number of blocks */
     int *blockSizes;	/* Comma separated list of block sizes */
     int *chromStarts;	/* Start positions relative to chromStart */
     float lrtAllPValue;	/* A: LRT P-value  on all branches */
     unsigned char lrtAllIsFdr;	/* A: true if FDR significant */
     float lrtPrimateBrPValue;	/* B: LRT P-value  on branch leading to primates */
     unsigned char lrtPrimateBrIsFdr;	/* B: true if FDR significant */
     float lrtPrimateClPValue;	/* C: LRT P-value  on primate clade */
     unsigned char lrtPrimateClIsFdr;	/* C: true if FDR significant */
     float lrtRodentBrPValue;	/* D: LRT P-value  on branch leading to rodents */
     unsigned char lrtRodentBrIsFdr;	/* D: true if FDR significant */
     float lrtRodentClPValue;	/* E: LRT P-value  on rodent clade */
     unsigned char lrtRodentClIsFdr;	/* E: true if FDR significant */
     float lrtHumanPValue;	/* F: LRT P-value  on human lineage */
     unsigned char lrtHumanIsFdr;	/* F: true if FDR significant */
     float lrtChimpPValue;	/* G: LRT P-value  on chimp lineage */
     unsigned char lrtChimpIsFdr;	/* G: true if FDR significant */
     float lrtHominidPValue;	/* H: LRT P-value  on branch leading to hominids */
     unsigned char lrtHominidIsFdr;	/* H: true if FDR significant */
     float lrtMacaquePValue;	/* I: LRT P-value  on human lineage */
     unsigned char lrtMacaqueIsFdr;	/* I: true if FDR significant */
     unsigned bestHist;	/* Most likely history (Bayesian analysis) */
     float bestHistPP;	/* Probability of the most likely history */
     unsigned nextBestHist;	/* 2nd most likely history (Bayesian analysis) */
     float nextBestHistPP;	/* Probability of the 2nd most likely history */
     };
 
 struct mammalPsg *mammalPsgLoad(char **row);
 /* Load a mammalPsg from row fetched with select * from mammalPsg
  * from database.  Dispose of this with mammalPsgFree(). */
 
 struct mammalPsg *mammalPsgLoadAll(char *fileName);
 /* Load all mammalPsg from whitespace-separated file.
  * Dispose of this with mammalPsgFreeList(). */
 
 struct mammalPsg *mammalPsgLoadAllByChar(char *fileName, char chopper);
 /* Load all mammalPsg from chopper separated file.
  * Dispose of this with mammalPsgFreeList(). */
 
 #define mammalPsgLoadAllByTab(a) mammalPsgLoadAllByChar(a, '\t');
 /* Load all mammalPsg from tab separated file.
  * Dispose of this with mammalPsgFreeList(). */
 
 struct mammalPsg *mammalPsgCommaIn(char **pS, struct mammalPsg *ret);
 /* Create a mammalPsg out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new mammalPsg */
 
 void mammalPsgFree(struct mammalPsg **pEl);
 /* Free a single dynamically allocated mammalPsg such as created
  * with mammalPsgLoad(). */
 
 void mammalPsgFreeList(struct mammalPsg **pList);
 /* Free a list of dynamically allocated mammalPsg's */
 
 void mammalPsgOutput(struct mammalPsg *el, FILE *f, char sep, char lastSep);
 /* Print out mammalPsg.  Separate fields with sep. Follow last field with lastSep. */
 
 #define mammalPsgTabOut(el,f) mammalPsgOutput(el,f,'\t','\n');
 /* Print out mammalPsg as a line in a tab-separated file. */
 
 #define mammalPsgCommaOut(el,f) mammalPsgOutput(el,f,',',',');
 /* Print out mammalPsg as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* MAMMALPSG_H */