4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/orthoAlleles.h src/hg/inc/orthoAlleles.h
index 37fed0a..230985e 100644
--- src/hg/inc/orthoAlleles.h
+++ src/hg/inc/orthoAlleles.h
@@ -1,85 +1,85 @@
 /* orthoAlleles.h was originally generated by the autoSql program, which also 
  * generated orthoAlleles.c and orthoAlleles.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2006 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef ORTHOALLELES_H
 #define ORTHOALLELES_H
 
 #define ORTHOALLELES_NUM_COLS 22
 
 struct orthoAlleles
 /* SNP data with orthologous alleles */
     {
     struct orthoAlleles *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chrom */
     unsigned chromEnd;	/* End position in chrom */
     char *name;	/* Name of SNP - rsId or temporary name */
     unsigned score;	/* 0 */
     char strand;	/* + or - */
     char allele1;	/* A, C, G, or T */
     float allele1Freq;	/* From 0.0 to 1.0 */
     unsigned allele1Count;	/* From 1 to sample size */
     char allele2;	/* A, C, G, or T, different from allele1 */
     float allele2Freq;	/* 1.0 - allele1Freq */
     unsigned allele2Count;	/* sample size - allele1Count */
     char *ortho1Chrom;	/* Chromosome of orthologous species 1 */
     unsigned ortho1ChromStart;	/* Start position in species 1 */
     unsigned ortho1ChromEnd;	/* End position in species 1 */
     char ortho1Strand;	/* + or - or . */
     char *ortho1State;	/* A, C, G, T, a, c, g, t, or . */
     char *ortho2Chrom;	/* Chromosome of orthologous species 2 */
     unsigned ortho2ChromStart;	/* Start position in species 2 */
     unsigned ortho2ChromEnd;	/* End position in species 2 */
     char ortho2Strand;	/* + or - or . */
     char *ortho2State;	/* A, C, G, T, a, c, g, t, or . */
     };
 
 void orthoAllelesStaticLoad(char **row, struct orthoAlleles *ret);
 /* Load a row from orthoAlleles table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct orthoAlleles *orthoAllelesLoad(char **row);
 /* Load a orthoAlleles from row fetched with select * from orthoAlleles
  * from database.  Dispose of this with orthoAllelesFree(). */
 
 struct orthoAlleles *orthoAllelesLoadAll(char *fileName);
 /* Load all orthoAlleles from whitespace-separated file.
  * Dispose of this with orthoAllelesFreeList(). */
 
 struct orthoAlleles *orthoAllelesLoadAllByChar(char *fileName, char chopper);
 /* Load all orthoAlleles from chopper separated file.
  * Dispose of this with orthoAllelesFreeList(). */
 
 #define orthoAllelesLoadAllByTab(a) orthoAllelesLoadAllByChar(a, '\t');
 /* Load all orthoAlleles from tab separated file.
  * Dispose of this with orthoAllelesFreeList(). */
 
 struct orthoAlleles *orthoAllelesCommaIn(char **pS, struct orthoAlleles *ret);
 /* Create a orthoAlleles out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new orthoAlleles */
 
 void orthoAllelesFree(struct orthoAlleles **pEl);
 /* Free a single dynamically allocated orthoAlleles such as created
  * with orthoAllelesLoad(). */
 
 void orthoAllelesFreeList(struct orthoAlleles **pList);
 /* Free a list of dynamically allocated orthoAlleles's */
 
 void orthoAllelesOutput(struct orthoAlleles *el, FILE *f, char sep, char lastSep);
 /* Print out orthoAlleles.  Separate fields with sep. Follow last field with lastSep. */
 
 #define orthoAllelesTabOut(el,f) orthoAllelesOutput(el,f,'\t','\n');
 /* Print out orthoAlleles as a line in a tab-separated file. */
 
 #define orthoAllelesCommaOut(el,f) orthoAllelesOutput(el,f,',',',');
 /* Print out orthoAlleles as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* ORTHOALLELES_H */