4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/peptideMapping.h src/hg/inc/peptideMapping.h
index 39e14cf..95c3180 100644
--- src/hg/inc/peptideMapping.h
+++ src/hg/inc/peptideMapping.h
@@ -1,73 +1,73 @@
 /* peptideMapping.h was originally generated by the autoSql program, which also 
  * generated peptideMapping.c and peptideMapping.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef PEPTIDEMAPPING_H
 #define PEPTIDEMAPPING_H
 
 #define PEPTIDEMAPPING_NUM_COLS 10
 
 struct peptideMapping
 /* Format for genomic mappings of mass spec proteogenomic hits */
     {
     struct peptideMapping *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Peptide sequence of the hit */
     unsigned score;	/* Log e-value scaled to a score of 0 (worst) to 1000 (best) */
     char strand[2];	/* + or - */
     float rawScore;	/* Raw score for this hit, as estimated through HMM analysis */
     char *spectrumId;	/* Non-unique identifier for the spectrum file */
     unsigned peptideRank;	/* Rank of this hit, for peptides with multiple genomic hits */
     unsigned peptideRepeatCount;	/* Indicates how many times this same hit was observed */
     };
 
 void peptideMappingStaticLoad(char **row, struct peptideMapping *ret);
 /* Load a row from peptideMapping table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct peptideMapping *peptideMappingLoad(char **row);
 /* Load a peptideMapping from row fetched with select * from peptideMapping
  * from database.  Dispose of this with peptideMappingFree(). */
 
 struct peptideMapping *peptideMappingLoadAll(char *fileName);
 /* Load all peptideMapping from whitespace-separated file.
  * Dispose of this with peptideMappingFreeList(). */
 
 struct peptideMapping *peptideMappingLoadAllByChar(char *fileName, char chopper);
 /* Load all peptideMapping from chopper separated file.
  * Dispose of this with peptideMappingFreeList(). */
 
 #define peptideMappingLoadAllByTab(a) peptideMappingLoadAllByChar(a, '\t');
 /* Load all peptideMapping from tab separated file.
  * Dispose of this with peptideMappingFreeList(). */
 
 struct peptideMapping *peptideMappingCommaIn(char **pS, struct peptideMapping *ret);
 /* Create a peptideMapping out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new peptideMapping */
 
 void peptideMappingFree(struct peptideMapping **pEl);
 /* Free a single dynamically allocated peptideMapping such as created
  * with peptideMappingLoad(). */
 
 void peptideMappingFreeList(struct peptideMapping **pList);
 /* Free a list of dynamically allocated peptideMapping's */
 
 void peptideMappingOutput(struct peptideMapping *el, FILE *f, char sep, char lastSep);
 /* Print out peptideMapping.  Separate fields with sep. Follow last field with lastSep. */
 
 #define peptideMappingTabOut(el,f) peptideMappingOutput(el,f,'\t','\n');
 /* Print out peptideMapping as a line in a tab-separated file. */
 
 #define peptideMappingCommaOut(el,f) peptideMappingOutput(el,f,',',',');
 /* Print out peptideMapping as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* PEPTIDEMAPPING_H */