4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/inc/pslReader.h src/hg/inc/pslReader.h index fd9a7d3..d60074a 100644 --- src/hg/inc/pslReader.h +++ src/hg/inc/pslReader.h @@ -1,75 +1,75 @@ /* pslReader - object to read psl objects from database tables or files. */ /* Copyright (C) 2013 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef PSLREADER_H #define PSLREADER_H /* Options to pslGetCreateSql */ #define PSL_TNAMEIX 0x01 /* create target name index */ #define PSL_WITH_BIN 0x02 /* add bin column */ char* pslGetCreateSql(char* table, unsigned options, int tNameIdxLen); /* Get SQL required to create PSL table. Options is a bit set consisting * of PSL_TNAMEIX, PSL_WITH_BIN, and PSL_XA_FORMAT. tNameIdxLen is * the number of characters in target name to index. If greater than * zero, must specify PSL_TNAMEIX. If zero and PSL_TNAMEIX is specified, * to will default to 8. */ struct pslReader; struct sqlConnection; struct pslReader *pslReaderQuery(struct sqlConnection* conn, char* table, char* where); /* Create a new pslReader to read from the given table in the database. * If where is not null, it is added as a where clause. It will determine if * pslx columns are in the table. */ struct pslReader *pslReaderChromQuery(struct sqlConnection* conn, char* table, char* chrom, char* extraWhere); /* Create a new pslReader to read all rows for a chrom in a database table. * If extraWhere is not null, it is added as an additional where condition. It * will determine if pslx columns are in the table. */ struct pslReader *pslReaderRangeQuery(struct sqlConnection* conn, char* table, char* chrom, int start, int end, char* extraWhere); /* Create a new pslReader to read a chrom range in a database table. If * extraWhere is not null, it is added as an additional where condition. It * will determine if pslx columns are in the table. */ struct pslReader *pslReaderFile(char* pslFile, char* chrom); /* Create a new pslReader to read from a file. If chrom is not null, * only this chromsome is read. Checks for psl header and pslx columns. */ struct psl *pslReaderNext(struct pslReader* pr); /* Read the next psl, returning NULL if no more */ struct psl *pslReaderAll(struct pslReader* pr); /* Read the all of psls */ void pslReaderFree(struct pslReader** prPtr); /* Free the pslRead object. */ struct psl *pslReaderLoadQuery(struct sqlConnection* conn, char* table, char* where); /* Function that encapsulates doing a query and loading the results */ struct psl *pslReaderLoadRangeQuery(struct sqlConnection* conn, char* table, char* chrom, int start, int end, char* extraWhere); /* Function that encapsulates doing a range query and loading the results */ struct psl *pslReaderLoadDb(char* db, char* table, char* where); /* Function that encapsulates reading a PSLs from a database If where is not * null, it is added as a where clause. It will determine if pslx columns are * in the table. */ struct psl *pslReaderLoadFile(char* pslFile, char* chrom); /* Function that encapsulates reading a psl file */ #endif