4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/rmskAlign.h src/hg/inc/rmskAlign.h
index fcfdfbd..3929b2b 100644
--- src/hg/inc/rmskAlign.h
+++ src/hg/inc/rmskAlign.h
@@ -1,80 +1,80 @@
 /* rmskAlign.h was originally generated by the autoSql program, which also 
  * generated rmskAlign.c and rmskAlign.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef RMSKALIGN_H
 #define RMSKALIGN_H
 
 #define RMSKALIGN_NUM_COLS 17
 
 struct rmskAlign
 /* RepeatMasker .align record */
     {
     struct rmskAlign *next;  /* Next in singly linked list. */
     unsigned swScore;	/* Smith Waterman alignment score */
     unsigned milliDiv;	/* Base mismatches in parts per thousand */
     unsigned milliDel;	/* Bases deleted in parts per thousand */
     unsigned milliIns;	/* Bases inserted in parts per thousand */
     char *genoName;	/* Genomic sequence name */
     unsigned genoStart;	/* Start in genomic sequence */
     unsigned genoEnd;	/* End in genomic sequence */
     int genoLeft;	/* -#bases after match in genomic sequence */
     char strand[2];	/* Relative orientation + or - */
     char *repName;	/* Name of repeat */
     char *repClass;	/* Class of repeat */
     char *repFamily;	/* Family of repeat */
     int repStart;	/* Start in repeat sequence */
     unsigned repEnd;	/* End in repeat sequence */
     int repLeft;	/* -#bases after match in repeat sequence */
     unsigned id;	/* The ID of the hit. Used to link related fragments */
     char *alignment;	/* The alignment data stored as a single string */
     };
 
 void rmskAlignStaticLoad(char **row, struct rmskAlign *ret);
 /* Load a row from rmskAlign table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct rmskAlign *rmskAlignLoad(char **row);
 /* Load a rmskAlign from row fetched with select * from rmskAlign
  * from database.  Dispose of this with rmskAlignFree(). */
 
 struct rmskAlign *rmskAlignLoadAll(char *fileName);
 /* Load all rmskAlign from whitespace-separated file.
  * Dispose of this with rmskAlignFreeList(). */
 
 struct rmskAlign *rmskAlignLoadAllByChar(char *fileName, char chopper);
 /* Load all rmskAlign from chopper separated file.
  * Dispose of this with rmskAlignFreeList(). */
 
 #define rmskAlignLoadAllByTab(a) rmskAlignLoadAllByChar(a, '\t');
 /* Load all rmskAlign from tab separated file.
  * Dispose of this with rmskAlignFreeList(). */
 
 struct rmskAlign *rmskAlignCommaIn(char **pS, struct rmskAlign *ret);
 /* Create a rmskAlign out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new rmskAlign */
 
 void rmskAlignFree(struct rmskAlign **pEl);
 /* Free a single dynamically allocated rmskAlign such as created
  * with rmskAlignLoad(). */
 
 void rmskAlignFreeList(struct rmskAlign **pList);
 /* Free a list of dynamically allocated rmskAlign's */
 
 void rmskAlignOutput(struct rmskAlign *el, FILE *f, char sep, char lastSep);
 /* Print out rmskAlign.  Separate fields with sep. Follow last field with lastSep. */
 
 #define rmskAlignTabOut(el,f) rmskAlignOutput(el,f,'\t','\n');
 /* Print out rmskAlign as a line in a tab-separated file. */
 
 #define rmskAlignCommaOut(el,f) rmskAlignOutput(el,f,',',',');
 /* Print out rmskAlign as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* RMSKALIGN_H */