4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/rnaPLFold.h src/hg/inc/rnaPLFold.h
index fb79f8a..7513922 100644
--- src/hg/inc/rnaPLFold.h
+++ src/hg/inc/rnaPLFold.h
@@ -1,79 +1,79 @@
 /* rnaPLFold.h was originally generated by the autoSql program, which also 
  * generated rnaPLFold.c and rnaPLFold.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2007 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef RNAPLFOLD_H
 #define RNAPLFOLD_H
 
 #define RNAPLFOLD_NUM_COLS 5
 
 struct rnaPLFold
 /* RNA PL Fold -- RNA Partition Function Local Fold */
     {
     struct rnaPLFold *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* chromStart for reference marker */
     unsigned chromEnd;	/* chromEnd for last marker in list */
     unsigned span;	/* Number of positions covered by colorIndex values */
     char *colorIndex;	/* PLFold values encoded as indexes in a color array */
     };
 
 void rnaPLFoldStaticLoad(char **row, struct rnaPLFold *ret);
 /* Load a row from rnaPLFold table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct rnaPLFold *rnaPLFoldLoad(char **row);
 /* Load a rnaPLFold from row fetched with select * from rnaPLFold
  * from database.  Dispose of this with rnaPLFoldFree(). */
 
 struct rnaPLFold *rnaPLFoldLoadAll(char *fileName);
 /* Load all rnaPLFold from whitespace-separated file.
  * Dispose of this with rnaPLFoldFreeList(). */
 
 struct rnaPLFold *rnaPLFoldLoadAllByChar(char *fileName, char chopper);
 /* Load all rnaPLFold from chopper separated file.
  * Dispose of this with rnaPLFoldFreeList(). */
 
 #define rnaPLFoldLoadAllByTab(a) rnaPLFoldLoadAllByChar(a, '\t');
 /* Load all rnaPLFold from tab separated file.
  * Dispose of this with rnaPLFoldFreeList(). */
 
 struct rnaPLFold *rnaPLFoldCommaIn(char **pS, struct rnaPLFold *ret);
 /* Create a rnaPLFold out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new rnaPLFold */
 
 void rnaPLFoldFree(struct rnaPLFold **pEl);
 /* Free a single dynamically allocated rnaPLFold such as created
  * with rnaPLFoldLoad(). */
 
 void rnaPLFoldFreeList(struct rnaPLFold **pList);
 /* Free a list of dynamically allocated rnaPLFold's */
 
 void rnaPLFoldOutput(struct rnaPLFold *el, FILE *f, char sep, char lastSep);
 /* Print out rnaPLFold.  Separate fields with sep. Follow last field with lastSep. */
 
 #define rnaPLFoldTabOut(el,f) rnaPLFoldOutput(el,f,'\t','\n');
 /* Print out rnaPLFold as a line in a tab-separated file. */
 
 #define rnaPLFoldCommaOut(el,f) rnaPLFoldOutput(el,f,',',',');
 /* Print out rnaPLFold as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #define RNAPLFOLD_DIAGDARK "RNAplfold.diagDark"
 #define RNAPLFOLD_DIAGDARK_DEF "50"
 #define RNAPLFOLD_DIAGLIGHT "RNAplfold.diagLight"
 #define RNAPLFOLD_DIAGLIGHT_DEF "10"
 #define RNAPLFOLD_MAXBPDISTANCE "RNAplfold.maxBpDistance"
 #define RNAPLFOLD_MAXBPDISTANCE_DEF "100"
 #define RNAPLFOLD_INVERT "RNAplfold.invert"
 #define RNAPLFOLD_INVERT_TOP "top"
 #define RNAPLFOLD_INVERT_BUTTOM "buttom"
 #define RNAPLFOLD_INVERT_DEF RNAPLFOLD_INVERT_BUTTOM
 
 #endif /* RNAPLFOLD_H */