4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/simpleRepeat.h src/hg/inc/simpleRepeat.h
index eca041f..080467f 100644
--- src/hg/inc/simpleRepeat.h
+++ src/hg/inc/simpleRepeat.h
@@ -1,72 +1,72 @@
 /* simpleRepeat.h was originally generated by the autoSql program, which also 
  * generated simpleRepeat.c and simpleRepeat.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2002 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef SIMPLEREPEAT_H
 #define SIMPLEREPEAT_H
 
 struct simpleRepeat
 /* Describes the Simple Tandem Repeats */
     {
     struct simpleRepeat *next;  /* Next in singly linked list. */
     char *chrom;	/* Human chromosome or FPC contig */
     unsigned chromStart;	/* Start position in chromosome */
     unsigned chromEnd;	/* End position in chromosome */
     char *name;	/* Simple Repeats tag name */
     unsigned period;	/* Length of repeat unit */
     float copyNum;	/* Mean number of copies of repeat */
     unsigned consensusSize;	/* Length of consensus sequence */
     unsigned perMatch;	/* Percentage Match */
     unsigned perIndel;	/* Percentage Indel */
     unsigned score;	/* Score between  and .  Best is . */
     unsigned A;	/* Number of A's in repeat unit */
     unsigned C;	/* Number of C's in repeat unit */
     unsigned G;	/* Number of G's in repeat unit */
     unsigned T;	/* Number of T's in repeat unit */
     float entropy;	/* Entropy */
     char *sequence;	/* Sequence of repeat unit element */
     };
 
 void simpleRepeatStaticLoad(char **row, struct simpleRepeat *ret);
 /* Load a row from simpleRepeat table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct simpleRepeat *simpleRepeatLoad(char **row);
 /* Load a simpleRepeat from row fetched with select * from simpleRepeat
  * from database.  Dispose of this with simpleRepeatFree(). */
 
 struct simpleRepeat *simpleRepeatLoadAll(char *fileName);
 /* Load all simpleRepeat from a tab-separated file.
  * Dispose of this with simpleRepeatFreeList(). */
 
 struct simpleRepeat *simpleRepeatLoadWhere(struct sqlConnection *conn, char *table, char *where);
 /* Load all simpleRepeat from table that satisfy where clause. The
  * where clause may be NULL in which case whole table is loaded
  * Dispose of this with simpleRepeatFreeList(). */
 
 struct simpleRepeat *simpleRepeatCommaIn(char **pS, struct simpleRepeat *ret);
 /* Create a simpleRepeat out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new simpleRepeat */
 
 void simpleRepeatFree(struct simpleRepeat **pEl);
 /* Free a single dynamically allocated simpleRepeat such as created
  * with simpleRepeatLoad(). */
 
 void simpleRepeatFreeList(struct simpleRepeat **pList);
 /* Free a list of dynamically allocated simpleRepeat's */
 
 void simpleRepeatOutput(struct simpleRepeat *el, FILE *f, char sep, char lastSep);
 /* Print out simpleRepeat.  Separate fields with sep. Follow last field with lastSep. */
 
 #define simpleRepeatTabOut(el,f) simpleRepeatOutput(el,f,'\t','\n');
 /* Print out simpleRepeat as a line in a tab-separated file. */
 
 #define simpleRepeatCommaOut(el,f) simpleRepeatOutput(el,f,',',',');
 /* Print out simpleRepeat as a comma separated list including final comma. */
 
 #endif /* SIMPLEREPEAT_H */