4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/snp132Ext.h src/hg/inc/snp132Ext.h
index 1ab25db..4ae9d78 100644
--- src/hg/inc/snp132Ext.h
+++ src/hg/inc/snp132Ext.h
@@ -1,84 +1,84 @@
 /* snp132Ext.h was originally generated by the autoSql program, which also 
  * generated snp132Ext.c and snp132Ext.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2010 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef SNP132EXT_H
 #define SNP132EXT_H
 
 #define SNP132EXT_NUM_COLS 25
 
 struct snp132Ext
 /* Polymorphism data from dbSNP */
     {
     struct snp132Ext *next;  /* Next in singly linked list. */
     char *chrom;	/* Reference sequence chromosome or scaffold */
     unsigned chromStart;	/* Start position in chrom */
     unsigned chromEnd;	/* End position in chrom */
     char *name;	/* dbSNP Reference SNP (rs) identifier */
     unsigned score;	/* Not used */
     char *strand;	/* Which DNA strand contains the observed alleles */
     char *refNCBI;	/* Reference genomic sequence from dbSNP */
     char *refUCSC;	/* Reference genomic sequence from UCSC lookup of chrom,chromStart,chromEnd */
     char *observed;	/* The sequences of the observed alleles from rs-fasta files */
     char *molType;	/* Sample type from exemplar submitted SNPs (ss) */
     char *class;	/* Class of variant (single, in-del, named, mixed, etc.) */
     char *valid;	/* Validation status of the SNP */
     float avHet;	/* Average heterozygosity from all observations.  Note: may be computed on small number of samples. */
     float avHetSE;	/* Standard Error for the average heterozygosity */
     char *func;	/* Functional category of the SNP (coding-synon, coding-nonsynon, intron, etc.) */
     char *locType;	/* Type of mapping inferred from size on reference; may not agree with class */
     unsigned weight;	/* The quality of the alignment: 1 = unique mapping, 2 = non-unique, 3 = many matches */
     char *exceptions;	/* Unusual conditions noted by UCSC that may indicate a problem with the data */
     int submitterCount;	/* Number of distinct submitter handles for submitted SNPs for this ref SNP */
     char **submitters;	/* List of submitter handles */
     int alleleFreqCount;	/* Number of observed alleles with frequency data */
     char **alleles;	/* Observed alleles for which frequency data are available */
     float *alleleNs;	/* Count of chromosomes (2N) on which each allele was observed. Note: this is extrapolated by dbSNP from submitted frequencies and total sample 2N, and is not always an integer. */
     float *alleleFreqs;	/* Allele frequencies */
     char *bitfields;	/* SNP attributes extracted from dbSNP's SNP_bitfield table */
     };
 
 struct snp132Ext *snp132ExtLoad(char **row);
 /* Load a snp132Ext from row fetched with select * from snp132Ext
  * from database.  Dispose of this with snp132ExtFree(). */
 
 struct snp132Ext *snp132ExtLoadAll(char *fileName);
 /* Load all snp132Ext from whitespace-separated file.
  * Dispose of this with snp132ExtFreeList(). */
 
 struct snp132Ext *snp132ExtLoadAllByChar(char *fileName, char chopper);
 /* Load all snp132Ext from chopper separated file.
  * Dispose of this with snp132ExtFreeList(). */
 
 #define snp132ExtLoadAllByTab(a) snp132ExtLoadAllByChar(a, '\t');
 /* Load all snp132Ext from tab separated file.
  * Dispose of this with snp132ExtFreeList(). */
 
 struct snp132Ext *snp132ExtCommaIn(char **pS, struct snp132Ext *ret);
 /* Create a snp132Ext out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new snp132Ext */
 
 void snp132ExtFree(struct snp132Ext **pEl);
 /* Free a single dynamically allocated snp132Ext such as created
  * with snp132ExtLoad(). */
 
 void snp132ExtFreeList(struct snp132Ext **pList);
 /* Free a list of dynamically allocated snp132Ext's */
 
 void snp132ExtOutput(struct snp132Ext *el, FILE *f, char sep, char lastSep);
 /* Print out snp132Ext.  Separate fields with sep. Follow last field with lastSep. */
 
 #define snp132ExtTabOut(el,f) snp132ExtOutput(el,f,'\t','\n');
 /* Print out snp132Ext as a line in a tab-separated file. */
 
 #define snp132ExtCommaOut(el,f) snp132ExtOutput(el,f,',',',');
 /* Print out snp132Ext as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* SNP132EXT_H */