4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/taxonNode.h src/hg/inc/taxonNode.h
index b87e555..5b09784 100644
--- src/hg/inc/taxonNode.h
+++ src/hg/inc/taxonNode.h
@@ -1,94 +1,94 @@
 /* taxonNode.h was originally generated by the autoSql program, which also 
  * generated taxonNode.c and taxonNode.sql.  This header links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef TAXONNODE_H
 #define TAXONNODE_H
 
 #ifndef JKSQL_H
 #include "jksql.h"
 #endif
 
 #define TAXONNODE_NUM_COLS 13
 
 struct taxonNode
 /* ncbi taxonomy node tree */
     {
     struct taxonNode *next;  /* Next in singly linked list. */
     unsigned taxon;	/* node id in GenBank taxonomy database */
     unsigned parent;	/* parent node id in GenBank taxonomy database */
     char *rank;	/* rank of this node (superkingdom, kingdom, ...)  */
     char *emblcode;	/* locus-name prefix; not unique */
     unsigned division;	/* ncbiDivision id (0=Bacteria, 2=Mammal, 5=Primate, 6=Rodent, 10=Vertabrate...) */
     unsigned inheritedDiv;	/* 1 if node inherits division from parent */
     unsigned geneticCode;	/* genetic code used by species, see ncbiGencode */
     unsigned inheritedGC;	/* 1 if node inherits genetic code from parent */
     unsigned mitoGeneticCode;	/* genetic code of mitochondria see ncbiGencode */
     unsigned inheritedMitoGC;	/* 1 if node inherits mitochondrial gencode from parent */
     unsigned GenBankHidden;	/* 1 if name is suppressed in GenBank entry lineage */
     unsigned notSequenced;	/* 1 if this subtree has no sequence data yet */
     char *comments;	/* free-text comments and citations */
     };
 
 void taxonNodeStaticLoad(char **row, struct taxonNode *ret);
 /* Load a row from taxonNode table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 
 struct taxonNode *taxonNodeLoad(char **row);
 /* Load a taxonNode from row fetched with select * from taxonNode
  * from database.  Dispose of this with taxonNodeFree(). */
 
 struct taxonNode *taxonNodeLoadAll(char *fileName);
 /* Load all taxonNode from whitespace-separated file.
  * Dispose of this with taxonNodeFreeList(). */
 
 struct taxonNode *taxonNodeLoadAllByChar(char *fileName, char chopper);
 /* Load all taxonNode from chopper separated file.
  * Dispose of this with taxonNodeFreeList(). */
 
 #define taxonNodeLoadAllByTab(a) taxonNodeLoadAllByChar(a, '\t');
 /* Load all taxonNode from tab separated file.
  * Dispose of this with taxonNodeFreeList(). */
 
 struct taxonNode *taxonNodeLoadByQuery(struct sqlConnection *conn, char *query);
 /* Load all taxonNode from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with taxonNodeFreeList(). */
 
 void taxonNodeSaveToDb(struct sqlConnection *conn, struct taxonNode *el, char *tableName, int updateSize);
 /* Save taxonNode as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 
 struct taxonNode *taxonNodeCommaIn(char **pS, struct taxonNode *ret);
 /* Create a taxonNode out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new taxonNode */
 
 void taxonNodeFree(struct taxonNode **pEl);
 /* Free a single dynamically allocated taxonNode such as created
  * with taxonNodeLoad(). */
 
 void taxonNodeFreeList(struct taxonNode **pList);
 /* Free a list of dynamically allocated taxonNode's */
 
 void taxonNodeOutput(struct taxonNode *el, FILE *f, char sep, char lastSep);
 /* Print out taxonNode.  Separate fields with sep. Follow last field with lastSep. */
 
 #define taxonNodeTabOut(el,f) taxonNodeOutput(el,f,'\t','\n');
 /* Print out taxonNode as a line in a tab-separated file. */
 
 #define taxonNodeCommaOut(el,f) taxonNodeOutput(el,f,',',',');
 /* Print out taxonNode as a comma separated list including final comma. */
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */
 
 #endif /* TAXONNODE_H */