4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/inc/variant.h src/hg/inc/variant.h
index df28050..8ada404 100644
--- src/hg/inc/variant.h
+++ src/hg/inc/variant.h
@@ -1,49 +1,49 @@
 /* variant.h -- a generic variant.  Meant to capture information that's in VCF or pgSNP. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #ifndef VARIANT_H
 #define VARIANT_H
 
 #include "annoRow.h"
 #include "localmem.h"
 #include "pgSnp.h"
 
 struct allele   // a single allele in a variant. 
     {
     struct allele *next;
     struct variant *variant;
     char *sequence;
     int length;
     boolean isReference;
     };
 
 struct variant   // a single variant
     {
     struct variant *next;  /* Next in singly linked list. */
     char *chrom;	/* Chromosome */
     unsigned chromStart;	/* Start position in chrom */
     unsigned chromEnd;	/* End position in chrom */
     unsigned numAlleles;   /* the number of alleles */
     struct allele *alleles;	/* alleles */
     };
 
 struct variant *variantNew(char *chrom, unsigned start, unsigned end, unsigned numAlleles,
 			   char *slashSepAlleles, char *refAllele, struct lm *lm);
 /* Create a variant from basic information that is easy to extract from most other variant
  * formats: coords, allele count, string of slash-separated alleles and reference allele. */
 
 struct variant *variantFromPgSnpAnnoRow(struct annoRow *row, char *refAllele, boolean hasBin,
                                         struct lm *lm);
 /* Translate pgSnp annoRow into variant (allocated by lm). */
 
 struct variant *variantFromVcfAnnoRow(struct annoRow *row, char *refAllele, struct lm *lm,
 				      struct dyString *dyScratch);
 /* Translate vcf array of words into variant (allocated by lm, overwriting dyScratch
  * as temporary scratch string). */
 
 struct allele  *alleleClip(struct allele *allele, int sx, int ex, struct lm *lm);
 /* Return new allele pointing to new variant, both clipped to region defined by sx..ex. */
 
 #endif /* VARIANT_H*/