4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/cdsOrtho.c src/hg/lib/cdsOrtho.c
index 444bd07..148017d 100644
--- src/hg/lib/cdsOrtho.c
+++ src/hg/lib/cdsOrtho.c
@@ -1,156 +1,156 @@
 /* cdsOrtho.c was originally generated by the autoSql program, which also 
  * generated cdsOrtho.h and cdsOrtho.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "cdsOrtho.h"
 
 
 void cdsOrthoStaticLoad(char **row, struct cdsOrtho *ret)
 /* Load a row from cdsOrtho table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->start = sqlSigned(row[1]);
 ret->end = sqlSigned(row[2]);
 ret->species = row[3];
 ret->missing = sqlSigned(row[4]);
 ret->orthoSize = sqlSigned(row[5]);
 ret->possibleSize = sqlSigned(row[6]);
 ret->ratio = sqlDouble(row[7]);
 }
 
 struct cdsOrtho *cdsOrthoLoad(char **row)
 /* Load a cdsOrtho from row fetched with select * from cdsOrtho
  * from database.  Dispose of this with cdsOrthoFree(). */
 {
 struct cdsOrtho *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->start = sqlSigned(row[1]);
 ret->end = sqlSigned(row[2]);
 ret->species = cloneString(row[3]);
 ret->missing = sqlSigned(row[4]);
 ret->orthoSize = sqlSigned(row[5]);
 ret->possibleSize = sqlSigned(row[6]);
 ret->ratio = sqlDouble(row[7]);
 return ret;
 }
 
 struct cdsOrtho *cdsOrthoLoadAll(char *fileName) 
 /* Load all cdsOrtho from a whitespace-separated file.
  * Dispose of this with cdsOrthoFreeList(). */
 {
 struct cdsOrtho *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = cdsOrthoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct cdsOrtho *cdsOrthoLoadAllByChar(char *fileName, char chopper) 
 /* Load all cdsOrtho from a chopper separated file.
  * Dispose of this with cdsOrthoFreeList(). */
 {
 struct cdsOrtho *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = cdsOrthoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct cdsOrtho *cdsOrthoCommaIn(char **pS, struct cdsOrtho *ret)
 /* Create a cdsOrtho out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new cdsOrtho */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->start = sqlSignedComma(&s);
 ret->end = sqlSignedComma(&s);
 ret->species = sqlStringComma(&s);
 ret->missing = sqlSignedComma(&s);
 ret->orthoSize = sqlSignedComma(&s);
 ret->possibleSize = sqlSignedComma(&s);
 ret->ratio = sqlDoubleComma(&s);
 *pS = s;
 return ret;
 }
 
 void cdsOrthoFree(struct cdsOrtho **pEl)
 /* Free a single dynamically allocated cdsOrtho such as created
  * with cdsOrthoLoad(). */
 {
 struct cdsOrtho *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->species);
 freez(pEl);
 }
 
 void cdsOrthoFreeList(struct cdsOrtho **pList)
 /* Free a list of dynamically allocated cdsOrtho's */
 {
 struct cdsOrtho *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     cdsOrthoFree(&el);
     }
 *pList = NULL;
 }
 
 void cdsOrthoOutput(struct cdsOrtho *el, FILE *f, char sep, char lastSep) 
 /* Print out cdsOrtho.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->start);
 fputc(sep,f);
 fprintf(f, "%d", el->end);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->species);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->missing);
 fputc(sep,f);
 fprintf(f, "%d", el->orthoSize);
 fputc(sep,f);
 fprintf(f, "%d", el->possibleSize);
 fputc(sep,f);
 fprintf(f, "%g", el->ratio);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */