4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/columnInfo.c src/hg/lib/columnInfo.c
index 336603d..c1d42fa 100644
--- src/hg/lib/columnInfo.c
+++ src/hg/lib/columnInfo.c
@@ -1,187 +1,187 @@
 /* columnInfo.c was originally generated by the autoSql program, which also 
  * generated columnInfo.h and columnInfo.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "columnInfo.h"
 
 
 void columnInfoStaticLoad(char **row, struct columnInfo *ret)
 /* Load a row from columnInfo table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->type = row[1];
 ret->nullAllowed = row[2];
 ret->key = row[3];
 ret->defaultVal = row[4];
 ret->extra = row[5];
 }
 
 struct columnInfo *columnInfoLoad(char **row)
 /* Load a columnInfo from row fetched with select * from columnInfo
  * from database.  Dispose of this with columnInfoFree(). */
 {
 struct columnInfo *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->type = cloneString(row[1]);
 ret->nullAllowed = cloneString(row[2]);
 ret->key = cloneString(row[3]);
 ret->defaultVal = cloneString(row[4]);
 ret->extra = cloneString(row[5]);
 return ret;
 }
 
 struct columnInfo *columnInfoLoadAll(char *fileName) 
 /* Load all columnInfo from a tab-separated file.
  * Dispose of this with columnInfoFreeList(). */
 {
 struct columnInfo *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[6];
 
 while (lineFileRow(lf, row))
     {
     el = columnInfoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct columnInfo *columnInfoLoadByQuery(struct sqlConnection *conn, char *query)
 /* Load all columnInfo from table that satisfy the query given.  
  * Where query is of the form 'select * from example where something=something'
  * or 'select example.* from example, anotherTable where example.something = 
  * anotherTable.something'.
  * Dispose of this with columnInfoFreeList(). */
 {
 struct columnInfo *list = NULL, *el;
 struct sqlResult *sr;
 char **row;
 int i = 0;
 int colCount = 0; 
 sr = sqlGetResult(conn, query);
 colCount = sqlCountColumns(sr);
 
 while ((row = sqlNextRow(sr)) != NULL)
     {
     /* The colCount check makes sure that we are compatible
        with mysql 4.x where they have added a collation field. Would 
        like to write a query that specifies the colums. Really should
        write the query to be column specific but the describe and show columns
        commands appear to be all there is. */
     if(colCount > 6 && stringIn("DESCRIBE", query))
 	for(i=2; i<colCount-1; i++)
 	    row[i] = row[i+1];
     el = columnInfoLoad(row);
     slAddHead(&list, el);
     }
 slReverse(&list);
 sqlFreeResult(&sr);
 return list;
 }
 
 void columnInfoSaveToDb(struct sqlConnection *conn, struct columnInfo *el, char *tableName, int updateSize)
 /* Save columnInfo as a row to the table specified by tableName. 
  * As blob fields may be arbitrary size updateSize specifies the approx size
  * of a string that would contain the entire query. Arrays of native types are
  * converted to comma separated strings and loaded as such, User defined types are
  * inserted as NULL. Strings are automatically escaped to allow insertion into the database. */
 {
 struct dyString *update = newDyString(updateSize);
 sqlDyStringPrintf(update, "insert into %s values ( '%s','%s','%s','%s','%s','%s')", 
 	tableName,  el->name,  el->type,  el->nullAllowed,  el->key,  el->defaultVal,  el->extra);
 sqlUpdate(conn, update->string);
 freeDyString(&update);
 }
 
 struct columnInfo *columnInfoCommaIn(char **pS, struct columnInfo *ret)
 /* Create a columnInfo out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new columnInfo */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->type = sqlStringComma(&s);
 ret->nullAllowed = sqlStringComma(&s);
 ret->key = sqlStringComma(&s);
 ret->defaultVal = sqlStringComma(&s);
 ret->extra = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void columnInfoFree(struct columnInfo **pEl)
 /* Free a single dynamically allocated columnInfo such as created
  * with columnInfoLoad(). */
 {
 struct columnInfo *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->type);
 freeMem(el->nullAllowed);
 freeMem(el->key);
 freeMem(el->defaultVal);
 freeMem(el->extra);
 freez(pEl);
 }
 
 void columnInfoFreeList(struct columnInfo **pList)
 /* Free a list of dynamically allocated columnInfo's */
 {
 struct columnInfo *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     columnInfoFree(&el);
     }
 *pList = NULL;
 }
 
 void columnInfoOutput(struct columnInfo *el, FILE *f, char sep, char lastSep) 
 /* Print out columnInfo.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->type);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->nullAllowed);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->key);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->defaultVal);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->extra);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */