4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/lib/encode/encodeHapMapAlleleFreq.c src/hg/lib/encode/encodeHapMapAlleleFreq.c index 25e1785..ed574d7 100644 --- src/hg/lib/encode/encodeHapMapAlleleFreq.c +++ src/hg/lib/encode/encodeHapMapAlleleFreq.c @@ -1,190 +1,190 @@ /* encodeHapMapAlleleFreq.c was originally generated by the autoSql program, which also * generated encodeHapMapAlleleFreq.h and encodeHapMapAlleleFreq.sql. This module links the database and * the RAM representation of objects. */ /* Copyright (C) 2011 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #include "common.h" #include "linefile.h" #include "dystring.h" #include "jksql.h" #include "encode/encodeHapMapAlleleFreq.h" void encodeHapMapAlleleFreqStaticLoad(char **row, struct encodeHapMapAlleleFreq *ret) /* Load a row from encodeHapMapAlleleFreq table into ret. The contents of ret will * be replaced at the next call to this function. */ { ret->chrom = row[0]; ret->chromStart = sqlUnsigned(row[1]); ret->chromEnd = sqlUnsigned(row[2]); ret->name = row[3]; ret->score = sqlUnsigned(row[4]); strcpy(ret->strand, row[5]); ret->center = row[6]; strcpy(ret->refAllele, row[7]); strcpy(ret->otherAllele, row[8]); ret->refAlleleFreq = atof(row[9]); ret->otherAlleleFreq = atof(row[10]); ret->minorAlleleFreq = atof(row[11]); ret->totalCount = sqlUnsigned(row[12]); } struct encodeHapMapAlleleFreq *encodeHapMapAlleleFreqLoad(char **row) /* Load a encodeHapMapAlleleFreq from row fetched with select * from encodeHapMapAlleleFreq * from database. Dispose of this with encodeHapMapAlleleFreqFree(). */ { struct encodeHapMapAlleleFreq *ret; AllocVar(ret); ret->chrom = cloneString(row[0]); ret->chromStart = sqlUnsigned(row[1]); ret->chromEnd = sqlUnsigned(row[2]); ret->name = cloneString(row[3]); ret->score = sqlUnsigned(row[4]); strcpy(ret->strand, row[5]); ret->center = cloneString(row[6]); strcpy(ret->refAllele, row[7]); strcpy(ret->otherAllele, row[8]); ret->refAlleleFreq = atof(row[9]); ret->otherAlleleFreq = atof(row[10]); ret->minorAlleleFreq = atof(row[11]); ret->totalCount = sqlUnsigned(row[12]); return ret; } struct encodeHapMapAlleleFreq *encodeHapMapAlleleFreqLoadAll(char *fileName) /* Load all encodeHapMapAlleleFreq from a whitespace-separated file. * Dispose of this with encodeHapMapAlleleFreqFreeList(). */ { struct encodeHapMapAlleleFreq *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[13]; while (lineFileRow(lf, row)) { el = encodeHapMapAlleleFreqLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct encodeHapMapAlleleFreq *encodeHapMapAlleleFreqLoadAllByChar(char *fileName, char chopper) /* Load all encodeHapMapAlleleFreq from a chopper separated file. * Dispose of this with encodeHapMapAlleleFreqFreeList(). */ { struct encodeHapMapAlleleFreq *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[13]; while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) { el = encodeHapMapAlleleFreqLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct encodeHapMapAlleleFreq *encodeHapMapAlleleFreqCommaIn(char **pS, struct encodeHapMapAlleleFreq *ret) /* Create a encodeHapMapAlleleFreq out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new encodeHapMapAlleleFreq */ { char *s = *pS; if (ret == NULL) AllocVar(ret); ret->chrom = sqlStringComma(&s); ret->chromStart = sqlUnsignedComma(&s); ret->chromEnd = sqlUnsignedComma(&s); ret->name = sqlStringComma(&s); ret->score = sqlUnsignedComma(&s); sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand)); ret->center = sqlStringComma(&s); sqlFixedStringComma(&s, ret->refAllele, sizeof(ret->refAllele)); sqlFixedStringComma(&s, ret->otherAllele, sizeof(ret->otherAllele)); ret->refAlleleFreq = sqlFloatComma(&s); ret->otherAlleleFreq = sqlFloatComma(&s); ret->minorAlleleFreq = sqlFloatComma(&s); ret->totalCount = sqlUnsignedComma(&s); *pS = s; return ret; } void encodeHapMapAlleleFreqFree(struct encodeHapMapAlleleFreq **pEl) /* Free a single dynamically allocated encodeHapMapAlleleFreq such as created * with encodeHapMapAlleleFreqLoad(). */ { struct encodeHapMapAlleleFreq *el; if ((el = *pEl) == NULL) return; freeMem(el->chrom); freeMem(el->name); freeMem(el->center); freez(pEl); } void encodeHapMapAlleleFreqFreeList(struct encodeHapMapAlleleFreq **pList) /* Free a list of dynamically allocated encodeHapMapAlleleFreq's */ { struct encodeHapMapAlleleFreq *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; encodeHapMapAlleleFreqFree(&el); } *pList = NULL; } void encodeHapMapAlleleFreqOutput(struct encodeHapMapAlleleFreq *el, FILE *f, char sep, char lastSep) /* Print out encodeHapMapAlleleFreq. Separate fields with sep. Follow last field with lastSep. */ { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->chrom); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%u", el->chromStart); fputc(sep,f); fprintf(f, "%u", el->chromEnd); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->name); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%u", el->score); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->strand); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->center); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->refAllele); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->otherAllele); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%g", el->refAlleleFreq); fputc(sep,f); fprintf(f, "%g", el->otherAlleleFreq); fputc(sep,f); fprintf(f, "%g", el->minorAlleleFreq); fputc(sep,f); fprintf(f, "%u", el->totalCount); fputc(lastSep,f); } /* -------------------------------- End autoSql Generated Code -------------------------------- */