4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/lib/encode/wgEncodeGencodeExonSupport.c src/hg/lib/encode/wgEncodeGencodeExonSupport.c index 07e6619..1228efd 100644 --- src/hg/lib/encode/wgEncodeGencodeExonSupport.c +++ src/hg/lib/encode/wgEncodeGencodeExonSupport.c @@ -1,160 +1,160 @@ /* wgEncodeGencodeExonSupport.c was originally generated by the autoSql program, which also * generated wgEncodeGencodeExonSupport.h and wgEncodeGencodeExonSupport.sql. This module links the database and * the RAM representation of objects. */ /* Copyright (C) 2012 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #include "common.h" #include "linefile.h" #include "dystring.h" #include "jksql.h" #include "encode/wgEncodeGencodeExonSupport.h" void wgEncodeGencodeExonSupportStaticLoad(char **row, struct wgEncodeGencodeExonSupport *ret) /* Load a row from wgEncodeGencodeExonSupport table into ret. The contents of ret will * be replaced at the next call to this function. */ { ret->transcriptId = row[0]; ret->seqId = row[1]; ret->seqSrc = row[2]; ret->exonId = row[3]; ret->chrom = row[4]; ret->chromStart = sqlUnsigned(row[5]); ret->chromEnd = sqlUnsigned(row[6]); } struct wgEncodeGencodeExonSupport *wgEncodeGencodeExonSupportLoad(char **row) /* Load a wgEncodeGencodeExonSupport from row fetched with select * from wgEncodeGencodeExonSupport * from database. Dispose of this with wgEncodeGencodeExonSupportFree(). */ { struct wgEncodeGencodeExonSupport *ret; AllocVar(ret); ret->transcriptId = cloneString(row[0]); ret->seqId = cloneString(row[1]); ret->seqSrc = cloneString(row[2]); ret->exonId = cloneString(row[3]); ret->chrom = cloneString(row[4]); ret->chromStart = sqlUnsigned(row[5]); ret->chromEnd = sqlUnsigned(row[6]); return ret; } struct wgEncodeGencodeExonSupport *wgEncodeGencodeExonSupportLoadAll(char *fileName) /* Load all wgEncodeGencodeExonSupport from a whitespace-separated file. * Dispose of this with wgEncodeGencodeExonSupportFreeList(). */ { struct wgEncodeGencodeExonSupport *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[7]; while (lineFileRow(lf, row)) { el = wgEncodeGencodeExonSupportLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct wgEncodeGencodeExonSupport *wgEncodeGencodeExonSupportLoadAllByChar(char *fileName, char chopper) /* Load all wgEncodeGencodeExonSupport from a chopper separated file. * Dispose of this with wgEncodeGencodeExonSupportFreeList(). */ { struct wgEncodeGencodeExonSupport *list = NULL, *el; struct lineFile *lf = lineFileOpen(fileName, TRUE); char *row[7]; while (lineFileNextCharRow(lf, chopper, row, ArraySize(row))) { el = wgEncodeGencodeExonSupportLoad(row); slAddHead(&list, el); } lineFileClose(&lf); slReverse(&list); return list; } struct wgEncodeGencodeExonSupport *wgEncodeGencodeExonSupportCommaIn(char **pS, struct wgEncodeGencodeExonSupport *ret) /* Create a wgEncodeGencodeExonSupport out of a comma separated string. * This will fill in ret if non-null, otherwise will * return a new wgEncodeGencodeExonSupport */ { char *s = *pS; if (ret == NULL) AllocVar(ret); ret->transcriptId = sqlStringComma(&s); ret->seqId = sqlStringComma(&s); ret->seqSrc = sqlStringComma(&s); ret->exonId = sqlStringComma(&s); ret->chrom = sqlStringComma(&s); ret->chromStart = sqlUnsignedComma(&s); ret->chromEnd = sqlUnsignedComma(&s); *pS = s; return ret; } void wgEncodeGencodeExonSupportFree(struct wgEncodeGencodeExonSupport **pEl) /* Free a single dynamically allocated wgEncodeGencodeExonSupport such as created * with wgEncodeGencodeExonSupportLoad(). */ { struct wgEncodeGencodeExonSupport *el; if ((el = *pEl) == NULL) return; freeMem(el->transcriptId); freeMem(el->seqId); freeMem(el->seqSrc); freeMem(el->exonId); freeMem(el->chrom); freez(pEl); } void wgEncodeGencodeExonSupportFreeList(struct wgEncodeGencodeExonSupport **pList) /* Free a list of dynamically allocated wgEncodeGencodeExonSupport's */ { struct wgEncodeGencodeExonSupport *el, *next; for (el = *pList; el != NULL; el = next) { next = el->next; wgEncodeGencodeExonSupportFree(&el); } *pList = NULL; } void wgEncodeGencodeExonSupportOutput(struct wgEncodeGencodeExonSupport *el, FILE *f, char sep, char lastSep) /* Print out wgEncodeGencodeExonSupport. Separate fields with sep. Follow last field with lastSep. */ { if (sep == ',') fputc('"',f); fprintf(f, "%s", el->transcriptId); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->seqId); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->seqSrc); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->exonId); if (sep == ',') fputc('"',f); fputc(sep,f); if (sep == ',') fputc('"',f); fprintf(f, "%s", el->chrom); if (sep == ',') fputc('"',f); fputc(sep,f); fprintf(f, "%u", el->chromStart); fputc(sep,f); fprintf(f, "%u", el->chromEnd); fputc(lastSep,f); } /* -------------------------------- End autoSql Generated Code -------------------------------- */