4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/encode/wgEncodeGencodePolyAFeature.c src/hg/lib/encode/wgEncodeGencodePolyAFeature.c
index 8c43b63..25d2d62 100644
--- src/hg/lib/encode/wgEncodeGencodePolyAFeature.c
+++ src/hg/lib/encode/wgEncodeGencodePolyAFeature.c
@@ -1,164 +1,164 @@
 /* wgEncodeGencodePolyAFeature.c was originally generated by the autoSql program, which also 
  * generated wgEncodeGencodePolyAFeature.h and wgEncodeGencodePolyAFeature.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2011 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "encode/wgEncodeGencodePolyAFeature.h"
 
 
 /* definitions for feature column */
 static char *values_feature[] = {"polyA_signal", "polyA_site", "pseudo_polyA", NULL};
 static struct hash *valhash_feature = NULL;
 
 void wgEncodeGencodePolyAFeatureStaticLoad(char **row, struct wgEncodeGencodePolyAFeature *ret)
 /* Load a row from wgEncodeGencodePolyAFeature table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->transcriptId = row[0];
 ret->transcriptStart = sqlSigned(row[1]);
 ret->transcriptEnd = sqlSigned(row[2]);
 ret->chrom = row[3];
 ret->chromStart = sqlSigned(row[4]);
 ret->endStart = sqlSigned(row[5]);
 ret->strand = row[6][0];
 ret->feature = sqlEnumParse(row[7], values_feature, &valhash_feature);
 }
 
 struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureLoad(char **row)
 /* Load a wgEncodeGencodePolyAFeature from row fetched with select * from wgEncodeGencodePolyAFeature
  * from database.  Dispose of this with wgEncodeGencodePolyAFeatureFree(). */
 {
 struct wgEncodeGencodePolyAFeature *ret;
 
 AllocVar(ret);
 ret->transcriptId = cloneString(row[0]);
 ret->transcriptStart = sqlSigned(row[1]);
 ret->transcriptEnd = sqlSigned(row[2]);
 ret->chrom = cloneString(row[3]);
 ret->chromStart = sqlSigned(row[4]);
 ret->endStart = sqlSigned(row[5]);
 ret->strand = row[6][0];
 ret->feature = sqlEnumParse(row[7], values_feature, &valhash_feature);
 return ret;
 }
 
 struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureLoadAll(char *fileName) 
 /* Load all wgEncodeGencodePolyAFeature from a whitespace-separated file.
  * Dispose of this with wgEncodeGencodePolyAFeatureFreeList(). */
 {
 struct wgEncodeGencodePolyAFeature *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileRow(lf, row))
     {
     el = wgEncodeGencodePolyAFeatureLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureLoadAllByChar(char *fileName, char chopper) 
 /* Load all wgEncodeGencodePolyAFeature from a chopper separated file.
  * Dispose of this with wgEncodeGencodePolyAFeatureFreeList(). */
 {
 struct wgEncodeGencodePolyAFeature *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[8];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = wgEncodeGencodePolyAFeatureLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct wgEncodeGencodePolyAFeature *wgEncodeGencodePolyAFeatureCommaIn(char **pS, struct wgEncodeGencodePolyAFeature *ret)
 /* Create a wgEncodeGencodePolyAFeature out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new wgEncodeGencodePolyAFeature */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->transcriptId = sqlStringComma(&s);
 ret->transcriptStart = sqlSignedComma(&s);
 ret->transcriptEnd = sqlSignedComma(&s);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlSignedComma(&s);
 ret->endStart = sqlSignedComma(&s);
 sqlFixedStringComma(&s, &(ret->strand), sizeof(ret->strand));
 ret->feature = sqlEnumComma(&s, values_feature, &valhash_feature);
 *pS = s;
 return ret;
 }
 
 void wgEncodeGencodePolyAFeatureFree(struct wgEncodeGencodePolyAFeature **pEl)
 /* Free a single dynamically allocated wgEncodeGencodePolyAFeature such as created
  * with wgEncodeGencodePolyAFeatureLoad(). */
 {
 struct wgEncodeGencodePolyAFeature *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->transcriptId);
 freeMem(el->chrom);
 freez(pEl);
 }
 
 void wgEncodeGencodePolyAFeatureFreeList(struct wgEncodeGencodePolyAFeature **pList)
 /* Free a list of dynamically allocated wgEncodeGencodePolyAFeature's */
 {
 struct wgEncodeGencodePolyAFeature *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     wgEncodeGencodePolyAFeatureFree(&el);
     }
 *pList = NULL;
 }
 
 void wgEncodeGencodePolyAFeatureOutput(struct wgEncodeGencodePolyAFeature *el, FILE *f, char sep, char lastSep) 
 /* Print out wgEncodeGencodePolyAFeature.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->transcriptId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->transcriptStart);
 fputc(sep,f);
 fprintf(f, "%d", el->transcriptEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%d", el->endStart);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%c", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 sqlEnumPrint(f, el->feature, values_feature);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */