4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/geneTree.c src/hg/lib/geneTree.c
index efec8ae..ebd773a 100644
--- src/hg/lib/geneTree.c
+++ src/hg/lib/geneTree.c
@@ -1,126 +1,126 @@
 /* geneTree.c was originally generated by the autoSql program, which also 
  * generated geneTree.h and geneTree.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "geneTree.h"
 
 
 void geneTreeStaticLoad(char **row, struct geneTree *ret)
 /* Load a row from geneTree table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->name = row[0];
 ret->tree = row[1];
 }
 
 struct geneTree *geneTreeLoad(char **row)
 /* Load a geneTree from row fetched with select * from geneTree
  * from database.  Dispose of this with geneTreeFree(). */
 {
 struct geneTree *ret;
 
 AllocVar(ret);
 ret->name = cloneString(row[0]);
 ret->tree = cloneString(row[1]);
 return ret;
 }
 
 struct geneTree *geneTreeLoadAll(char *fileName) 
 /* Load all geneTree from a whitespace-separated file.
  * Dispose of this with geneTreeFreeList(). */
 {
 struct geneTree *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[2];
 
 while (lineFileRow(lf, row))
     {
     el = geneTreeLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct geneTree *geneTreeLoadAllByChar(char *fileName, char chopper) 
 /* Load all geneTree from a chopper separated file.
  * Dispose of this with geneTreeFreeList(). */
 {
 struct geneTree *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[2];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = geneTreeLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct geneTree *geneTreeCommaIn(char **pS, struct geneTree *ret)
 /* Create a geneTree out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new geneTree */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->name = sqlStringComma(&s);
 ret->tree = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void geneTreeFree(struct geneTree **pEl)
 /* Free a single dynamically allocated geneTree such as created
  * with geneTreeLoad(). */
 {
 struct geneTree *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->name);
 freeMem(el->tree);
 freez(pEl);
 }
 
 void geneTreeFreeList(struct geneTree **pList)
 /* Free a list of dynamically allocated geneTree's */
 {
 struct geneTree *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     geneTreeFree(&el);
     }
 *pList = NULL;
 }
 
 void geneTreeOutput(struct geneTree *el, FILE *f, char sep, char lastSep) 
 /* Print out geneTree.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->tree);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */