4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/goa.c src/hg/lib/goa.c
index d8446f9..8edbdb8 100644
--- src/hg/lib/goa.c
+++ src/hg/lib/goa.c
@@ -1,230 +1,230 @@
 /* goa.c was originally generated by the autoSql program, which also 
  * generated goa.h and goa.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "goa.h"
 
 
 void goaStaticLoad(char **row, struct goa *ret)
 /* Load a row from goa table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->db = row[0];
 ret->dbObjectId = row[1];
 ret->dbObjectSymbol = row[2];
 ret->notId = row[3];
 ret->goId = row[4];
 ret->dbReference = row[5];
 ret->evidence = row[6];
 ret->withFrom = row[7];
 ret->aspect = row[8];
 ret->dbObjectName = row[9];
 ret->synonym = row[10];
 ret->dbObjectType = row[11];
 ret->taxon = row[12];
 ret->date = row[13];
 ret->assignedBy = row[14];
 }
 
 struct goa *goaLoad(char **row)
 /* Load a goa from row fetched with select * from goa
  * from database.  Dispose of this with goaFree(). */
 {
 struct goa *ret;
 
 AllocVar(ret);
 ret->db = cloneString(row[0]);
 ret->dbObjectId = cloneString(row[1]);
 ret->dbObjectSymbol = cloneString(row[2]);
 ret->notId = cloneString(row[3]);
 ret->goId = cloneString(row[4]);
 ret->dbReference = cloneString(row[5]);
 ret->evidence = cloneString(row[6]);
 ret->withFrom = cloneString(row[7]);
 ret->aspect = cloneString(row[8]);
 ret->dbObjectName = cloneString(row[9]);
 ret->synonym = cloneString(row[10]);
 ret->dbObjectType = cloneString(row[11]);
 ret->taxon = cloneString(row[12]);
 ret->date = cloneString(row[13]);
 ret->assignedBy = cloneString(row[14]);
 return ret;
 }
 
 struct goa *goaLoadAll(char *fileName) 
 /* Load all goa from a whitespace-separated file.
  * Dispose of this with goaFreeList(). */
 {
 struct goa *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[15];
 
 while (lineFileRow(lf, row))
     {
     el = goaLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct goa *goaLoadAllByChar(char *fileName, char chopper) 
 /* Load all goa from a chopper separated file.
  * Dispose of this with goaFreeList(). */
 {
 struct goa *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[15];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = goaLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct goa *goaCommaIn(char **pS, struct goa *ret)
 /* Create a goa out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new goa */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->db = sqlStringComma(&s);
 ret->dbObjectId = sqlStringComma(&s);
 ret->dbObjectSymbol = sqlStringComma(&s);
 ret->notId = sqlStringComma(&s);
 ret->goId = sqlStringComma(&s);
 ret->dbReference = sqlStringComma(&s);
 ret->evidence = sqlStringComma(&s);
 ret->withFrom = sqlStringComma(&s);
 ret->aspect = sqlStringComma(&s);
 ret->dbObjectName = sqlStringComma(&s);
 ret->synonym = sqlStringComma(&s);
 ret->dbObjectType = sqlStringComma(&s);
 ret->taxon = sqlStringComma(&s);
 ret->date = sqlStringComma(&s);
 ret->assignedBy = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void goaFree(struct goa **pEl)
 /* Free a single dynamically allocated goa such as created
  * with goaLoad(). */
 {
 struct goa *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->db);
 freeMem(el->dbObjectId);
 freeMem(el->dbObjectSymbol);
 freeMem(el->notId);
 freeMem(el->goId);
 freeMem(el->dbReference);
 freeMem(el->evidence);
 freeMem(el->withFrom);
 freeMem(el->aspect);
 freeMem(el->dbObjectName);
 freeMem(el->synonym);
 freeMem(el->dbObjectType);
 freeMem(el->taxon);
 freeMem(el->date);
 freeMem(el->assignedBy);
 freez(pEl);
 }
 
 void goaFreeList(struct goa **pList)
 /* Free a list of dynamically allocated goa's */
 {
 struct goa *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     goaFree(&el);
     }
 *pList = NULL;
 }
 
 void goaOutput(struct goa *el, FILE *f, char sep, char lastSep) 
 /* Print out goa.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->db);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->dbObjectId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->dbObjectSymbol);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->notId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->goId);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->dbReference);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->evidence);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->withFrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->aspect);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->dbObjectName);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->synonym);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->dbObjectType);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->taxon);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->date);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->assignedBy);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */