4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/hapmapAllelesOrtho.c src/hg/lib/hapmapAllelesOrtho.c
index f7a6b89..bbd1c97 100644
--- src/hg/lib/hapmapAllelesOrtho.c
+++ src/hg/lib/hapmapAllelesOrtho.c
@@ -1,196 +1,196 @@
 /* hapmapAllelesOrtho.c was originally generated by the autoSql program, which also 
  * generated hapmapAllelesOrtho.h and hapmapAllelesOrtho.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "dystring.h"
 #include "jksql.h"
 #include "hapmapAllelesOrtho.h"
 
 
 void hapmapAllelesOrthoStaticLoad(char **row, struct hapmapAllelesOrtho *ret)
 /* Load a row from hapmapAllelesOrtho table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->refUCSC = row[6];
 ret->observed = row[7];
 ret->orthoChrom = row[8];
 ret->orthoStart = sqlUnsigned(row[9]);
 ret->orthoEnd = sqlUnsigned(row[10]);
 safecpy(ret->orthoStrand, sizeof(ret->orthoStrand), row[11]);
 safecpy(ret->orthoAllele, sizeof(ret->orthoAllele), row[12]);
 }
 
 struct hapmapAllelesOrtho *hapmapAllelesOrthoLoad(char **row)
 /* Load a hapmapAllelesOrtho from row fetched with select * from hapmapAllelesOrtho
  * from database.  Dispose of this with hapmapAllelesOrthoFree(). */
 {
 struct hapmapAllelesOrtho *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlUnsigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 safecpy(ret->strand, sizeof(ret->strand), row[5]);
 ret->refUCSC = cloneString(row[6]);
 ret->observed = cloneString(row[7]);
 ret->orthoChrom = cloneString(row[8]);
 ret->orthoStart = sqlUnsigned(row[9]);
 ret->orthoEnd = sqlUnsigned(row[10]);
 safecpy(ret->orthoStrand, sizeof(ret->orthoStrand), row[11]);
 safecpy(ret->orthoAllele, sizeof(ret->orthoAllele), row[12]);
 return ret;
 }
 
 struct hapmapAllelesOrtho *hapmapAllelesOrthoLoadAll(char *fileName) 
 /* Load all hapmapAllelesOrtho from a whitespace-separated file.
  * Dispose of this with hapmapAllelesOrthoFreeList(). */
 {
 struct hapmapAllelesOrtho *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[13];
 
 while (lineFileRow(lf, row))
     {
     el = hapmapAllelesOrthoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct hapmapAllelesOrtho *hapmapAllelesOrthoLoadAllByChar(char *fileName, char chopper) 
 /* Load all hapmapAllelesOrtho from a chopper separated file.
  * Dispose of this with hapmapAllelesOrthoFreeList(). */
 {
 struct hapmapAllelesOrtho *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[13];
 
 while (lineFileNextCharRow(lf, chopper, row, ArraySize(row)))
     {
     el = hapmapAllelesOrthoLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct hapmapAllelesOrtho *hapmapAllelesOrthoCommaIn(char **pS, struct hapmapAllelesOrtho *ret)
 /* Create a hapmapAllelesOrtho out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new hapmapAllelesOrtho */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlUnsignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->strand, sizeof(ret->strand));
 ret->refUCSC = sqlStringComma(&s);
 ret->observed = sqlStringComma(&s);
 ret->orthoChrom = sqlStringComma(&s);
 ret->orthoStart = sqlUnsignedComma(&s);
 ret->orthoEnd = sqlUnsignedComma(&s);
 sqlFixedStringComma(&s, ret->orthoStrand, sizeof(ret->orthoStrand));
 sqlFixedStringComma(&s, ret->orthoAllele, sizeof(ret->orthoAllele));
 *pS = s;
 return ret;
 }
 
 void hapmapAllelesOrthoFree(struct hapmapAllelesOrtho **pEl)
 /* Free a single dynamically allocated hapmapAllelesOrtho such as created
  * with hapmapAllelesOrthoLoad(). */
 {
 struct hapmapAllelesOrtho *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->refUCSC);
 freeMem(el->observed);
 freeMem(el->orthoChrom);
 freez(pEl);
 }
 
 void hapmapAllelesOrthoFreeList(struct hapmapAllelesOrtho **pList)
 /* Free a list of dynamically allocated hapmapAllelesOrtho's */
 {
 struct hapmapAllelesOrtho *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     hapmapAllelesOrthoFree(&el);
     }
 *pList = NULL;
 }
 
 void hapmapAllelesOrthoOutput(struct hapmapAllelesOrtho *el, FILE *f, char sep, char lastSep) 
 /* Print out hapmapAllelesOrtho.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->strand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->refUCSC);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->observed);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->orthoChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->orthoStart);
 fputc(sep,f);
 fprintf(f, "%u", el->orthoEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->orthoStrand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->orthoAllele);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }
 
 /* -------------------------------- End autoSql Generated Code -------------------------------- */