4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/sageCounts.c src/hg/lib/sageCounts.c
index 2211ee0..1dba8f3 100644
--- src/hg/lib/sageCounts.c
+++ src/hg/lib/sageCounts.c
@@ -1,114 +1,114 @@
 /* sageCounts.c was originally generated by the autoSql program, which also 
  * generated sageCounts.h and sageCounts.sql.  This module links the database and
  * the RAM representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "linefile.h"
 #include "jksql.h"
 #include "sageCounts.h"
 
 
 struct sageCounts *sageCountsLoad(char **row)
 /* Load a sageCounts from row fetched with select * from sageCounts
  * from database.  Dispose of this with sageCountsFree(). */
 {
 struct sageCounts *ret;
 int sizeOne;
 
 AllocVar(ret);
 ret->numExps = sqlSigned(row[1]);
 strcpy(ret->tag, row[0]);
 sqlSignedDynamicArray(row[2], &ret->expCounts, &sizeOne);
 assert(sizeOne == ret->numExps);
 return ret;
 }
 
 struct sageCounts *sageCountsLoadAll(char *fileName) 
 /* Load all sageCounts from a tab-separated file.
  * Dispose of this with sageCountsFreeList(). */
 {
 struct sageCounts *list = NULL, *el;
 struct lineFile *lf = lineFileOpen(fileName, TRUE);
 char *row[3];
 
 while (lineFileRow(lf, row))
     {
     el = sageCountsLoad(row);
     slAddHead(&list, el);
     }
 lineFileClose(&lf);
 slReverse(&list);
 return list;
 }
 
 struct sageCounts *sageCountsCommaIn(char **pS, struct sageCounts *ret)
 /* Create a sageCounts out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new sageCounts */
 {
 char *s = *pS;
 int i;
 
 if (ret == NULL)
     AllocVar(ret);
 sqlFixedStringComma(&s, ret->tag, sizeof(ret->tag));
 ret->numExps = sqlSignedComma(&s);
 s = sqlEatChar(s, '{');
 AllocArray(ret->expCounts, ret->numExps);
 for (i=0; i<ret->numExps; ++i)
     {
     ret->expCounts[i] = sqlSignedComma(&s);
     }
 s = sqlEatChar(s, '}');
 s = sqlEatChar(s, ',');
 *pS = s;
 return ret;
 }
 
 void sageCountsFree(struct sageCounts **pEl)
 /* Free a single dynamically allocated sageCounts such as created
  * with sageCountsLoad(). */
 {
 struct sageCounts *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->expCounts);
 freez(pEl);
 }
 
 void sageCountsFreeList(struct sageCounts **pList)
 /* Free a list of dynamically allocated sageCounts's */
 {
 struct sageCounts *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     sageCountsFree(&el);
     }
 *pList = NULL;
 }
 
 void sageCountsOutput(struct sageCounts *el, FILE *f, char sep, char lastSep) 
 /* Print out sageCounts.  Separate fields with sep. Follow last field with lastSep. */
 {
 int i;
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s%c", el->tag, sep);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d%c", el->numExps, sep);
 fputc(sep,f);
 if (sep == ',') fputc('{',f);
 for (i=0; i<el->numExps; ++i)
     {
     fprintf(f, "%d", el->expCounts[i]);
     fputc(',', f);
     }
 if (sep == ',') fputc('}',f);
 fputc(lastSep,f);
 }