4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/lib/stsMarker.c src/hg/lib/stsMarker.c
index 6dad829..3f6bc30 100644
--- src/hg/lib/stsMarker.c
+++ src/hg/lib/stsMarker.c
@@ -1,224 +1,224 @@
 /* stsMarker.c was originally generated by the autoSql program, which also 
  * generated stsMarker.h and stsMarker.sql.  This module links the database and the RAM 
  * representation of objects. */
 
 /* Copyright (C) 2014 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 
 #include "common.h"
 #include "jksql.h"
 #include "stsMarker.h"
 
 
 void stsMarkerStaticLoad(char **row, struct stsMarker *ret)
 /* Load a row from stsMarker table into ret.  The contents of ret will
  * be replaced at the next call to this function. */
 {
 
 ret->chrom = row[0];
 ret->chromStart = sqlSigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = row[3];
 ret->score = sqlUnsigned(row[4]);
 ret->identNo = sqlUnsigned(row[5]);
 ret->ctgAcc = row[6];
 ret->otherAcc = row[7];
 ret->genethonChrom = row[8];
 ret->genethonPos = atof(row[9]);
 ret->marshfieldChrom = row[10];
 ret->marshfieldPos = atof(row[11]);
 ret->gm99Gb4Chrom = row[12];
 ret->gm99Gb4Pos = atof(row[13]);
 ret->shgcG3Chrom = row[14];
 ret->shgcG3Pos = atof(row[15]);
 ret->wiYacChrom = row[16];
 ret->wiYacPos = atof(row[17]);
 ret->shgcTngChrom = row[18];
 ret->shgcTngPos = atof(row[19]);
 ret->fishChrom = row[20];
 ret->beginBand = row[21];
 ret->endBand = row[22];
 }
 
 struct stsMarker *stsMarkerLoad(char **row)
 /* Load a stsMarker from row fetched with select * from stsMarker
  * from database.  Dispose of this with stsMarkerFree(). */
 {
 struct stsMarker *ret;
 
 AllocVar(ret);
 ret->chrom = cloneString(row[0]);
 ret->chromStart = sqlSigned(row[1]);
 ret->chromEnd = sqlUnsigned(row[2]);
 ret->name = cloneString(row[3]);
 ret->score = sqlUnsigned(row[4]);
 ret->identNo = sqlUnsigned(row[5]);
 ret->ctgAcc = cloneString(row[6]);
 ret->otherAcc = cloneString(row[7]);
 ret->genethonChrom = cloneString(row[8]);
 ret->genethonPos = atof(row[9]);
 ret->marshfieldChrom = cloneString(row[10]);
 ret->marshfieldPos = atof(row[11]);
 ret->gm99Gb4Chrom = cloneString(row[12]);
 ret->gm99Gb4Pos = atof(row[13]);
 ret->shgcG3Chrom = cloneString(row[14]);
 ret->shgcG3Pos = atof(row[15]);
 ret->wiYacChrom = cloneString(row[16]);
 ret->wiYacPos = atof(row[17]);
 ret->shgcTngChrom = cloneString(row[18]);
 ret->shgcTngPos = atof(row[19]);
 ret->fishChrom = cloneString(row[20]);
 ret->beginBand = cloneString(row[21]);
 ret->endBand = cloneString(row[22]);
 return ret;
 }
 
 struct stsMarker *stsMarkerCommaIn(char **pS, struct stsMarker *ret)
 /* Create a stsMarker out of a comma separated string. 
  * This will fill in ret if non-null, otherwise will
  * return a new stsMarker */
 {
 char *s = *pS;
 
 if (ret == NULL)
     AllocVar(ret);
 ret->chrom = sqlStringComma(&s);
 ret->chromStart = sqlSignedComma(&s);
 ret->chromEnd = sqlUnsignedComma(&s);
 ret->name = sqlStringComma(&s);
 ret->score = sqlUnsignedComma(&s);
 ret->identNo = sqlUnsignedComma(&s);
 ret->ctgAcc = sqlStringComma(&s);
 ret->otherAcc = sqlStringComma(&s);
 ret->genethonChrom = sqlStringComma(&s);
 ret->genethonPos = sqlSignedComma(&s);
 ret->marshfieldChrom = sqlStringComma(&s);
 ret->marshfieldPos = sqlSignedComma(&s);
 ret->gm99Gb4Chrom = sqlStringComma(&s);
 ret->gm99Gb4Pos = sqlSignedComma(&s);
 ret->shgcG3Chrom = sqlStringComma(&s);
 ret->shgcG3Pos = sqlSignedComma(&s);
 ret->wiYacChrom = sqlStringComma(&s);
 ret->wiYacPos = sqlSignedComma(&s);
 ret->shgcTngChrom = sqlStringComma(&s);
 ret->shgcTngPos = sqlSignedComma(&s);
 ret->fishChrom = sqlStringComma(&s);
 ret->beginBand = sqlStringComma(&s);
 ret->endBand = sqlStringComma(&s);
 *pS = s;
 return ret;
 }
 
 void stsMarkerFree(struct stsMarker **pEl)
 /* Free a single dynamically allocated stsMarker such as created
  * with stsMarkerLoad(). */
 {
 struct stsMarker *el;
 
 if ((el = *pEl) == NULL) return;
 freeMem(el->chrom);
 freeMem(el->name);
 freeMem(el->ctgAcc);
 freeMem(el->otherAcc);
 freeMem(el->genethonChrom);
 freeMem(el->marshfieldChrom);
 freeMem(el->gm99Gb4Chrom);
 freeMem(el->shgcG3Chrom);
 freeMem(el->wiYacChrom);
 freeMem(el->shgcTngChrom);
 freeMem(el->fishChrom);
 freeMem(el->beginBand);
 freeMem(el->endBand);
 freez(pEl);
 }
 
 void stsMarkerFreeList(struct stsMarker **pList)
 /* Free a list of dynamically allocated stsMarker's */
 {
 struct stsMarker *el, *next;
 
 for (el = *pList; el != NULL; el = next)
     {
     next = el->next;
     stsMarkerFree(&el);
     }
 *pList = NULL;
 }
 
 void stsMarkerOutput(struct stsMarker *el, FILE *f, char sep, char lastSep) 
 /* Print out stsMarker.  Separate fields with sep. Follow last field with lastSep. */
 {
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%d", el->chromStart);
 fputc(sep,f);
 fprintf(f, "%u", el->chromEnd);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->name);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%u", el->score);
 fputc(sep,f);
 fprintf(f, "%u", el->identNo);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->ctgAcc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->otherAcc);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->genethonChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->genethonPos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->marshfieldChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->marshfieldPos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->gm99Gb4Chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->gm99Gb4Pos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->shgcG3Chrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->shgcG3Pos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->wiYacChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->wiYacPos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->shgcTngChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 fprintf(f, "%f", el->shgcTngPos);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->fishChrom);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->beginBand);
 if (sep == ',') fputc('"',f);
 fputc(sep,f);
 if (sep == ',') fputc('"',f);
 fprintf(f, "%s", el->endBand);
 if (sep == ',') fputc('"',f);
 fputc(lastSep,f);
 }