4898794edd81be5285ea6e544acbedeaeb31bf78 max Tue Nov 23 08:10:57 2021 -0800 Fixing pointers to README file for license in all source code files. refs #27614 diff --git src/hg/makeDb/hgCountAlign/align.h src/hg/makeDb/hgCountAlign/align.h index 63f103a..fb2802d 100644 --- src/hg/makeDb/hgCountAlign/align.h +++ src/hg/makeDb/hgCountAlign/align.h @@ -1,38 +1,38 @@ /* Copyright (C) 2002 The Regents of the University of California - * See README in this or parent directory for licensing information. */ + * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */ #ifndef ALIGN_H #define ALIGN_H #include "bits.h" struct align /* object used to hold an alignment (as a list of sorted axt objects) and * associated information. */ { char* tName; unsigned tStart; unsigned tEnd; unsigned tSize; /* zero if unknown */ struct axt *head; Bits* selectMap; /* Map of positions to count if not NULL */ }; struct align* alignNew(struct axt* axtList); /* Construct a new align object. */ void alignFree(struct align** aln); /* Free a align object. */ struct align* alignLoadAxtFile(char* fname); /* Construct an align object from an AXT file */ void alignSelectWithBedFile(struct align* aln, char *fname); /* select positions to count based on a BED file */ #define alignIsSelected(aln, pos) ((aln->selectMap == NULL) \ || bitReadOne(aln->selectMap, (pos - align->tStart))) /* Check if a position is selected */ #endif