4898794edd81be5285ea6e544acbedeaeb31bf78
max
  Tue Nov 23 08:10:57 2021 -0800
Fixing pointers to README file for license in all source code files. refs #27614

diff --git src/hg/makeDb/hgGeneBands/hgGeneBands.c src/hg/makeDb/hgGeneBands/hgGeneBands.c
index 850313f..e6eaf54 100644
--- src/hg/makeDb/hgGeneBands/hgGeneBands.c
+++ src/hg/makeDb/hgGeneBands/hgGeneBands.c
@@ -1,84 +1,84 @@
 /* hgGeneBands - Find bands for all genes. */
 
 /* Copyright (C) 2013 The Regents of the University of California 
- * See README in this or parent directory for licensing information. */
+ * See kent/LICENSE or http://genome.ucsc.edu/license/ for licensing information. */
 #include "common.h"
 #include "linefile.h"
 #include "hash.h"
 #include "dystring.h"
 #include "options.h"
 #include "jksql.h"
 #include "hdb.h"
 #include "refLink.h"
 #include "genePred.h"
 
 
 void usage()
 /* Explain usage and exit. */
 {
 errAbort(
   "hgGeneBands - Find bands for all genes\n"
   "usage:\n"
   "   hgGeneBands database outFile.tab\n"
   );
 }
 
 void printBands(char *database, struct refLink *rl, FILE *f)
 /* Print name of genes and bands it occurs on. */
 {
 struct sqlConnection *conn = hAllocConn(database);
 struct sqlResult *sr;
 char **row;
 struct genePred *gp;
 char query[512];
 int count = 0;
 struct dyString *bands = newDyString(0);
 char band[64];
 
 sqlSafef(query, sizeof query, "select * from refGene where name = '%s'", rl->mrnaAcc);
 sr = sqlGetResult(conn, query);
 while ((row = sqlNextRow(sr)) != NULL)
     {
     ++count;
     gp = genePredLoad(row);
     if (hChromBand(database, gp->chrom, (gp->txStart + gp->txEnd)/2, band))
         dyStringPrintf(bands, "%s,", band);
     else
         dyStringPrintf(bands, "n/a,");
     }
 if (count > 0)
     fprintf(f, "%s\t%s\t%d\t%s\n", rl->name, rl->mrnaAcc, count, bands->string);
 
 dyStringFree(&bands);
 sqlFreeResult(&sr);
 hFreeConn(&conn);
 }
 
 void hgGeneBands(char *database, char *outFile)
 /* hgGeneBands - Find bands for all genes. */
 {
 struct sqlConnection *conn = hAllocConn(database);
 struct sqlResult *sr;
 char **row;
 struct refLink rl;
 FILE *f = mustOpen(outFile, "w");
 
 sr = sqlGetResult(conn, NOSQLINJ "select * from refLink");
 while ((row = sqlNextRow(sr)) != NULL)
     {
     refLinkStaticLoad(row, &rl);
     printBands(database, &rl, f);
     }
 sqlFreeResult(&sr);
 hFreeConn(&conn);
 }
 
 int main(int argc, char *argv[])
 /* Process command line. */
 {
 optionHash(&argc, argv);
 if (argc != 3)
     usage();
 hgGeneBands(argv[1], argv[2]);
 return 0;
 }